Variant report

Variant	rs7873803
Chromosome Location	chr9:96271046-96271047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96212662..96217709-chr9:96266725..96273295,11	MCF-7	breast:
2	chr9:96264790..96266601-chr9:96268569..96271456,2	K562	blood:
3	chr9:96267811..96269599-chr9:96270496..96273259,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10115890	0.94[EUR][1000 genomes]
rs10119044	0.94[EUR][1000 genomes]
rs10119048	0.94[EUR][1000 genomes]
rs10119086	1.00[JPT][hapmap]
rs10120391	0.94[EUR][1000 genomes]
rs10121801	0.94[EUR][1000 genomes]
rs10992730	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12345304	0.94[EUR][1000 genomes]
rs12345623	0.94[EUR][1000 genomes]
rs16909145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909167	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs16909202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909214	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16909308	1.00[ASN][1000 genomes]
rs16912641	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2001588	1.00[CEU][hapmap]
rs41274380	1.00[EUR][1000 genomes]
rs41274382	1.00[EUR][1000 genomes]
rs41274392	1.00[EUR][1000 genomes]
rs41274394	1.00[EUR][1000 genomes]
rs6479486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020585	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7027881	1.00[EUR][1000 genomes]
rs7031483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035026	0.94[EUR][1000 genomes]
rs7043966	0.90[ASN][1000 genomes]
rs73527828	1.00[AMR][1000 genomes]
rs73651207	0.94[EUR][1000 genomes]
rs73651208	0.94[EUR][1000 genomes]
rs7849843	0.94[EUR][1000 genomes]
rs7864950	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7867699	0.94[EUR][1000 genomes]
rs7868092	0.94[EUR][1000 genomes]
rs7870558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7875378	0.94[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:96260400-96275600	Weak transcription	Esophagus	oesophagus
5	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
11	chr9:96263600-96275400	Weak transcription	Brain Germinal Matrix	brain
12	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:96264000-96273000	Weak transcription	Ovary	ovary
14	chr9:96264000-96273200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:96264000-96273400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:96264000-96273400	Weak transcription	Fetal Heart	heart
17	chr9:96264000-96273600	Weak transcription	Brain Angular Gyrus	brain
18	chr9:96264000-96275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:96264000-96280400	Weak transcription	Colonic Mucosa	Colon
20	chr9:96264000-96281600	Weak transcription	Aorta	Aorta
21	chr9:96264000-96286600	Weak transcription	NH-A	brain
22	chr9:96264200-96275400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:96264200-96281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
25	chr9:96264600-96271600	Strong transcription	Primary T cells from cord blood	blood
26	chr9:96265400-96275400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:96265800-96273600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:96265800-96275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr9:96265800-96278400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
31	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:96266000-96272200	Weak transcription	A549	lung
33	chr9:96266000-96273400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr9:96266000-96273600	Weak transcription	Brain Anterior Caudate	brain
35	chr9:96266000-96274000	Weak transcription	NHLF	lung
36	chr9:96266000-96275600	Weak transcription	Fetal Brain Female	brain
37	chr9:96266000-96279800	Weak transcription	HSMM	muscle
38	chr9:96266400-96271200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:96266600-96275600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:96266600-96279200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:96266800-96274200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:96267200-96273400	Weak transcription	Fetal Lung	lung
43	chr9:96267200-96273600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:96267200-96275200	Weak transcription	NHEK	skin
45	chr9:96267200-96276000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:96267200-96279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr9:96267200-96279800	Weak transcription	NHDF-Ad	bronchial
48	chr9:96267800-96272800	Weak transcription	Stomach Mucosa	stomach
49	chr9:96267800-96273000	Strong transcription	Dnd41	blood
50	chr9:96268000-96273800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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