Variant report

Variant	rs7020585
Chromosome Location	chr9:96205803-96205804
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96094285..96095889-chr9:96205467..96207499,2	MCF-7	breast:
2	chr9:96203810..96206170-chr9:96337322..96339817,2	MCF-7	breast:
3	chr9:96074295..96076793-chr9:96204759..96207230,4	MCF-7	breast:
4	chr9:96205732..96207366-chr9:96330397..96333362,2	MCF-7	breast:
5	chr9:96193866..96195671-chr9:96205217..96208189,2	K562	blood:
6	chr9:96085908..96088966-chr9:96204893..96207698,3	MCF-7	breast:
7	chr9:96204959..96207648-chr9:96208494..96210984,2	K562	blood:
8	chr9:96190108..96192969-chr9:96204717..96206224,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM120AOS-4	chr9:96205614-96206945	NONHSAT133255

No data

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10115890	0.94[EUR][1000 genomes]
rs10119044	0.94[EUR][1000 genomes]
rs10119048	0.94[EUR][1000 genomes]
rs10120391	0.94[EUR][1000 genomes]
rs10121801	0.94[EUR][1000 genomes]
rs10992730	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10992747	1.00[YRI][hapmap]
rs12345304	0.94[EUR][1000 genomes]
rs12345623	0.94[EUR][1000 genomes]
rs16909145	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16909167	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16909202	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16909214	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16909243	1.00[CEU][hapmap]
rs16909308	1.00[AMR][1000 genomes]
rs2001587	1.00[AMR][1000 genomes]
rs2001588	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2398854	1.00[AMR][1000 genomes]
rs35505758	1.00[AMR][1000 genomes]
rs41274380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479486	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs7031483	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7035026	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73522240	1.00[AMR][1000 genomes]
rs73522243	1.00[AMR][1000 genomes]
rs73522271	1.00[AMR][1000 genomes]
rs73522273	1.00[AMR][1000 genomes]
rs73522292	1.00[AMR][1000 genomes]
rs73522296	1.00[AMR][1000 genomes]
rs73651207	0.94[EUR][1000 genomes]
rs73651208	0.94[EUR][1000 genomes]
rs7849843	0.94[EUR][1000 genomes]
rs7864950	0.94[EUR][1000 genomes]
rs7867699	0.94[EUR][1000 genomes]
rs7868092	0.94[EUR][1000 genomes]
rs7870558	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs7873803	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7875378	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung
4	chr9:96194000-96207800	Weak transcription	Thymus	Thymus
5	chr9:96194200-96207600	Weak transcription	Primary T cells from cord blood	blood
6	chr9:96194400-96208000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr9:96194400-96208000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:96194400-96208400	Weak transcription	Fetal Intestine Small	intestine
9	chr9:96194400-96208400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:96194400-96208400	Weak transcription	Small Intestine	intestine
11	chr9:96194400-96208800	Weak transcription	Brain Anterior Caudate	brain
12	chr9:96194400-96209200	Weak transcription	Fetal Kidney	kidney
13	chr9:96194600-96208200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:96195400-96208200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:96195400-96208200	Weak transcription	Left Ventricle	heart
16	chr9:96195600-96207800	Weak transcription	GM12878-XiMat	blood
17	chr9:96195600-96208400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:96196800-96208400	Weak transcription	Fetal Lung	lung
19	chr9:96196800-96209600	Weak transcription	Psoas Muscle	Psoas
20	chr9:96197000-96208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:96197000-96212400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:96197200-96207800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:96197400-96208200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:96197400-96208800	Weak transcription	Colonic Mucosa	Colon
25	chr9:96197600-96207600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:96197800-96207800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:96197800-96209000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr9:96197800-96209200	Weak transcription	Brain Angular Gyrus	brain
29	chr9:96198000-96208000	Weak transcription	Primary B cells from cord blood	blood
30	chr9:96198000-96208200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:96198000-96212600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:96198200-96207600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:96198200-96208200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:96198400-96208200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:96198600-96208000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:96198800-96209000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr9:96199600-96208400	Weak transcription	Aorta	Aorta
38	chr9:96199800-96208200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:96200600-96208400	Weak transcription	Fetal Brain Female	brain
40	chr9:96200800-96208200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:96201200-96207600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:96201400-96207400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:96201600-96208200	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:96201600-96208800	Weak transcription	HMEC	breast
45	chr9:96202000-96208200	Weak transcription	Stomach Mucosa	stomach
46	chr9:96202000-96208400	Weak transcription	Hela-S3	cervix
47	chr9:96202000-96209200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr9:96203000-96208200	Weak transcription	Spleen	Spleen
49	chr9:96203200-96208200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:96203400-96207400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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