Variant report

Variant	rs16909202
Chromosome Location	chr9:96264773-96264774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96261936..96263563-chr9:96264731..96266679,2	MCF-7	breast:
2	chr9:96212252..96216666-chr9:96261096..96265019,5	K562	blood:
3	chr9:96252755..96257145-chr9:96262506..96266410,6	MCF-7	breast:
4	chr9:96211724..96215064-chr9:96263313..96268158,4	MCF-7	breast:
5	chr9:96264104..96265663-chr9:96285613..96287201,2	K562	blood:
6	chr9:96263050..96265153-chr9:96327344..96330219,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000263875	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10115890	0.94[EUR][1000 genomes]
rs10119044	0.94[EUR][1000 genomes]
rs10119048	0.94[EUR][1000 genomes]
rs10119086	1.00[JPT][hapmap]
rs10120391	0.94[EUR][1000 genomes]
rs10121801	0.94[EUR][1000 genomes]
rs10992730	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12345304	0.94[EUR][1000 genomes]
rs12345623	0.94[EUR][1000 genomes]
rs16909145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909167	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs16909214	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16909308	1.00[ASN][1000 genomes]
rs16912641	1.00[CEU][hapmap]
rs2001588	1.00[CEU][hapmap]
rs41274380	1.00[EUR][1000 genomes]
rs41274382	1.00[EUR][1000 genomes]
rs41274392	1.00[EUR][1000 genomes]
rs41274394	1.00[EUR][1000 genomes]
rs6479486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020585	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7027881	1.00[EUR][1000 genomes]
rs7031483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035026	0.94[EUR][1000 genomes]
rs7043966	0.90[ASN][1000 genomes]
rs73527828	1.00[AMR][1000 genomes]
rs73651207	0.94[EUR][1000 genomes]
rs73651208	0.94[EUR][1000 genomes]
rs7849843	0.94[EUR][1000 genomes]
rs7864950	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7867699	0.94[EUR][1000 genomes]
rs7868092	0.94[EUR][1000 genomes]
rs7870558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7873803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875378	0.94[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:96250400-96266000	Strong transcription	Fetal Muscle Trunk	muscle
5	chr9:96254800-96266600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:96255200-96266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:96255200-96267200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:96255400-96268400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:96255800-96266200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:96255800-96266800	Strong transcription	HepG2	liver
11	chr9:96256000-96265000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:96256400-96265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:96256400-96265800	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:96256400-96267200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:96256600-96265800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:96256800-96269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:96257200-96267200	Strong transcription	Fetal Intestine Large	intestine
18	chr9:96258800-96267200	Strong transcription	Fetal Lung	lung
19	chr9:96260400-96275600	Weak transcription	Esophagus	oesophagus
20	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:96263000-96268000	Weak transcription	Gastric	stomach
23	chr9:96263200-96265200	Weak transcription	Fetal Brain Female	brain
24	chr9:96263200-96267800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:96263200-96270600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:96263400-96265600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:96263400-96268400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr9:96263400-96269800	Weak transcription	Spleen	Spleen
32	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
33	chr9:96263600-96265200	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:96263600-96265600	Genic enhancers	Hela-S3	cervix
35	chr9:96263600-96265800	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:96263600-96275400	Weak transcription	Brain Germinal Matrix	brain
37	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr9:96264000-96264800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr9:96264000-96264800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:96264000-96264800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr9:96264000-96264800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:96264000-96265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:96264000-96265200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr9:96264000-96265200	Weak transcription	Brain Anterior Caudate	brain
45	chr9:96264000-96265200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr9:96264000-96265200	Strong transcription	A549	lung
47	chr9:96264000-96265200	Genic enhancers	Monocytes-CD14+_RO01746	blood
48	chr9:96264000-96265400	Strong transcription	Primary B cells from cord blood	blood
49	chr9:96264000-96265600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:96264000-96265600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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