Variant report

Variant	rs41274392
Chromosome Location	chr9:96213491-96213492
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr9:96213341-96214531	SK-N-SH_RA	brain:	n/a	chr9:96214044-96214055 chr9:96214043-96214057 chr9:96214044-96214058 chr9:96213851-96213860 chr9:96214046-96214055 chr9:96213846-96213860
2	POLR2A	chr9:96213133-96214099	HepG2	liver:	n/a	n/a
3	MAX	chr9:96212517-96216356	A549	lung:	n/a	chr9:96212814-96212824
4	POLR2A	chr9:96213098-96215015	HL-60	blood:	n/a	n/a
5	TAF1	chr9:96213275-96214077	H1-hESC	embryonic stem cell:	n/a	n/a
6	STAT5A	chr9:96213157-96213570	GM12878	blood:	n/a	n/a
7	MAZ	chr9:96213076-96214040	GM12878	blood:	n/a	n/a
8	POLR2A	chr9:96213063-96216221	Raji	blood:	n/a	n/a
9	STAT5A	chr9:96213059-96213616	GM12878	blood:	n/a	n/a
10	YY1	chr9:96213119-96215238	SK-N-SH	brain:	n/a	chr9:96214044-96214055 chr9:96214043-96214057 chr9:96215157-96215171 chr9:96214044-96214058 chr9:96213851-96213860 chr9:96214046-96214055 chr9:96213846-96213860
11	MAX	chr9:96212571-96213799	MCF-7	breast:	n/a	chr9:96212814-96212824
12	TBP	chr9:96212733-96216257	K562	blood:	n/a	n/a
13	YY1	chr9:96213235-96214970	HepG2	liver:	n/a	chr9:96214044-96214055 chr9:96214043-96214057 chr9:96214044-96214058 chr9:96213851-96213860 chr9:96214046-96214055 chr9:96213846-96213860
14	MAX	chr9:96212572-96214916	HepG2	liver:	n/a	chr9:96212814-96212824
15	POLR2A	chr9:96213046-96214809	K562	blood:	n/a	n/a
16	YY1	chr9:96213022-96215047	GM12878	blood:	n/a	chr9:96214044-96214055 chr9:96214043-96214057 chr9:96214044-96214058 chr9:96213851-96213860 chr9:96214046-96214055 chr9:96213846-96213860
17	CREB1	chr9:96212996-96214137	HepG2	liver:	n/a	n/a
18	HEY1	chr9:96213352-96214366	HepG2	liver:	n/a	n/a
19	POLR2A	chr9:96212631-96214052	GM12891	blood:	n/a	n/a
20	POLR2A	chr9:96212642-96214948	MCF10A-Er-Src	breast:	n/a	n/a
21	TAF1	chr9:96213285-96214934	HepG2	liver:	n/a	n/a
22	POLR2A	chr9:96213087-96214122	GM12878	blood:	n/a	n/a
23	GABPA	chr9:96213182-96214048	MCF-7	breast:	n/a	n/a
24	POLR2A	chr9:96213094-96214794	GM19099	blood:	n/a	n/a
25	POLR2A	chr9:96213045-96214952	GM12878	blood:	n/a	n/a
26	MAX	chr9:96213006-96214125	SK-N-SH	brain:	n/a	n/a
27	UBTF	chr9:96213254-96215502	K562	blood:	n/a	n/a
28	POLR2A	chr9:96213053-96214931	ECC-1	luminal epithelium:	n/a	n/a
29	POLR2A	chr9:96213097-96214931	MCF-7	breast:	n/a	n/a
30	HEY1	chr9:96213049-96214091	K562	blood:	n/a	n/a
31	POLR2A	chr9:96213068-96213929	GM12878	blood:	n/a	n/a
32	POLR2A	chr9:96213418-96214569	A549	lung:	n/a	n/a
33	HA-E2F1	chr9:96213421-96214696	Hela-S3	cervix:	n/a	chr9:96213849-96213859 chr9:96214063-96214072
34	PBX3	chr9:96213366-96213879	A549	lung:	n/a	n/a
35	TAF1	chr9:96213067-96214088	K562	blood:	n/a	n/a
36	TBP	chr9:96213114-96214011	HepG2	liver:	n/a	n/a
37	YY1	chr9:96213050-96213865	H1-hESC	embryonic stem cell:	n/a	chr9:96213851-96213860 chr9:96213846-96213860
38	MAX	chr9:96212972-96214925	ECC-1	luminal epithelium:	n/a	n/a
39	POLR2A	chr9:96213370-96213889	A549	lung:	n/a	n/a
40	POLR2A	chr9:96213370-96214130	A549	lung:	n/a	n/a
41	MYC	chr9:96212612-96216137	K562	blood:	n/a	chr9:96212814-96212824
42	RUNX3	chr9:96213038-96213743	GM12878	blood:	n/a	n/a
43	POLR2A	chr9:96212686-96215378	NB4	blood:	n/a	n/a
44	POLR2A	chr9:96213416-96214892	A549	lung:	n/a	n/a
45	MAX	chr9:96212979-96215010	MCF-7	breast:	n/a	n/a
46	YY1	chr9:96213379-96214117	GM12891	blood:	n/a	chr9:96214044-96214055 chr9:96214043-96214057 chr9:96214044-96214058 chr9:96213851-96213860 chr9:96214046-96214055 chr9:96213846-96213860
47	POLR2A	chr9:96213304-96214066	HUVEC	blood vessel:	n/a	n/a
48	EP300	chr9:96213152-96214663	SK-N-SH	brain:	n/a	chr9:96213851-96213860 chr9:96213849-96213858
49	MYC	chr9:96212580-96214647	K562	blood:	n/a	chr9:96212814-96212824
50	POLR2A	chr9:96213017-96213932	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:96213158..96214882-chr9:96338001..96341678,3	K562	blood:
2	chr9:95708784..95711358-chr9:96213029..96214881,2	K562	blood:
3	chr5:140699114..140701458-chr9:96212553..96215118,2	MCF-7	breast:
4	chr9:96212024..96217170-chr9:96326121..96330116,7	MCF-7	breast:
5	chr9:96211528..96214948-chr9:96337573..96343441,10	MCF-7	breast:
6	chr9:95431480..95432991-chr9:96212383..96214894,2	MCF-7	breast:
7	chr9:96069590..96071864-chr9:96210674..96213644,2	MCF-7	breast:
8	chr2:32390281..32391012-chr9:96213301..96214069,2	Hela-S3	cervix:
9	chr9:96213362..96216144-chr9:96327494..96330556,6	K562	blood:
10	chr9:96210381..96218248-chr9:96327402..96333234,10	MCF-7	breast:
11	chr9:95857571..95862229-chr9:96211597..96216359,5	K562	blood:
12	chr9:96196696..96199442-chr9:96211213..96213936,2	K562	blood:
13	chr9:96136909..96139271-chr9:96213401..96215594,2	MCF-7	breast:
14	chr9:96212967..96214736-chr9:96291128..96293396,2	MCF-7	breast:
15	chr11:57435199..57435913-chr9:96213260..96214133,2	Hela-S3	cervix:
16	chr3:5020867..5021393-chr9:96213397..96214214,2	Hela-S3	cervix:
17	chr11:843529..844337-chr9:96213113..96213884,2	Hela-S3	cervix:
18	chr11:68038564..68039441-chr9:96213435..96214095,2	Hela-S3	cervix:
19	chr17:57917246..57919859-chr9:96211459..96213785,2	MCF-7	breast:
20	chr9:95856800..95859803-chr9:96212504..96215667,3	MCF-7	breast:
21	chr9:91925154..91927939-chr9:96212965..96214710,2	K562	blood:
22	chr9:95820491..95823416-chr9:96211285..96213612,2	K562	blood:
23	chr5:133706254..133707055-chr9:96213363..96214082,2	Hela-S3	cervix:
24	chr9:96068198..96070765-chr9:96213243..96214998,2	MCF-7	breast:
25	chr9:96072987..96083429-chr9:96209751..96218385,15	MCF-7	breast:
26	chr19:47633594..47634392-chr9:96213441..96214291,2	NB4	blood:
27	chr1:145382535..145383246-chr9:96213034..96214021,2	Hela-S3	cervix:
28	chr1:209720785..209723139-chr9:96211827..96213695,2	MCF-7	breast:
29	chr9:95893830..95897202-chr9:96212872..96217148,4	MCF-7	breast:
30	chr9:96213362..96215557-chr9:96327494..96329016,2	K562	blood:
31	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
32	chr8:91656166..91658679-chr9:96213011..96215220,2	MCF-7	breast:
33	chr19:35490178..35491130-chr9:96213088..96214069,2	Hela-S3	cervix:

Variant related genes	Relation type
FAM120AOS	TF binding region
FAM120A	TF binding region
ENSG00000214063	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000269303	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000246792	Chromatin interaction
ENSG00000178913	Chromatin interaction
ENSG00000273345	Chromatin interaction
ENSG00000006837	Chromatin interaction
ENSG00000157303	Chromatin interaction
ENSG00000119048	Chromatin interaction
ENSG00000142230	Chromatin interaction
ENSG00000127084	Chromatin interaction
ENSG00000171067	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000123975	Chromatin interaction
ENSG00000127080	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000156599	Chromatin interaction
ENSG00000180694	Chromatin interaction
ENSG00000224260	Chromatin interaction
ENSG00000089351	Chromatin interaction
ENSG00000200570	Chromatin interaction
ENSG00000272716	Chromatin interaction
ENSG00000265112	Chromatin interaction
ENSG00000263875	Chromatin interaction
ENSG00000152683	Chromatin interaction
ENSG00000134107	Chromatin interaction
ENSG00000227603	Chromatin interaction
ENSG00000255729	Chromatin interaction

rs_ID	r²[population]
rs10115890	0.94[EUR][1000 genomes]
rs10119044	0.94[EUR][1000 genomes]
rs10119048	0.94[EUR][1000 genomes]
rs10120391	0.94[EUR][1000 genomes]
rs10121801	0.94[EUR][1000 genomes]
rs10992730	0.94[EUR][1000 genomes]
rs12345304	0.94[EUR][1000 genomes]
rs12345623	0.94[EUR][1000 genomes]
rs16909145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16909167	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16909202	1.00[EUR][1000 genomes]
rs16909214	1.00[EUR][1000 genomes]
rs16909308	1.00[AMR][1000 genomes]
rs2001587	1.00[AMR][1000 genomes]
rs2001588	1.00[AMR][1000 genomes]
rs2398854	1.00[AMR][1000 genomes]
rs35505758	1.00[AMR][1000 genomes]
rs41274380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274432	1.00[AMR][1000 genomes]
rs60016166	1.00[AMR][1000 genomes]
rs6479486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7020585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs7031483	1.00[EUR][1000 genomes]
rs7035026	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73522240	1.00[AMR][1000 genomes]
rs73522243	1.00[AMR][1000 genomes]
rs73522271	1.00[AMR][1000 genomes]
rs73522273	1.00[AMR][1000 genomes]
rs73522292	1.00[AMR][1000 genomes]
rs73522296	1.00[AMR][1000 genomes]
rs73523904	1.00[AMR][1000 genomes]
rs73523906	1.00[AMR][1000 genomes]
rs73651207	0.94[EUR][1000 genomes]
rs73651208	0.94[EUR][1000 genomes]
rs7849843	0.94[EUR][1000 genomes]
rs7864950	0.94[EUR][1000 genomes]
rs7867699	0.94[EUR][1000 genomes]
rs7868092	0.94[EUR][1000 genomes]
rs7870558	1.00[AMR][1000 genomes]
rs7873803	1.00[EUR][1000 genomes]
rs7875378	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96212000-96213600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr9:96212200-96213600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:96212200-96216200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr9:96212400-96213600	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr9:96212400-96213600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
6	chr9:96212400-96216000	Active TSS	NHLF	lung
7	chr9:96212400-96216200	Active TSS	Fetal Kidney	kidney
8	chr9:96212400-96216400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr9:96212400-96216400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:96212400-96216400	Active TSS	A549	lung
11	chr9:96212400-96216400	Active TSS	HSMM	muscle
12	chr9:96212400-96216600	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr9:96212400-96216800	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr9:96212400-96216800	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr9:96212400-96217000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:96212400-96217000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:96212600-96213600	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr9:96212600-96213600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr9:96212600-96213600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr9:96212600-96213600	Active TSS	Stomach Mucosa	stomach
21	chr9:96212600-96214200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:96212600-96216400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:96212600-96216400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:96212600-96216400	Active TSS	Aorta	Aorta
25	chr9:96212600-96216400	Active TSS	Ovary	ovary
26	chr9:96212600-96216400	Active TSS	NHDF-Ad	bronchial
27	chr9:96212600-96216600	Active TSS	H9 Cell Line	embryonic stem cell
28	chr9:96212600-96216600	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr9:96212600-96217000	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr9:96212600-96217200	Active TSS	H1 Cell Line	embryonic stem cell
31	chr9:96212600-96218400	Active TSS	GM12878-XiMat	blood
32	chr9:96212800-96213600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:96212800-96213800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:96212800-96214800	Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr9:96212800-96216200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:96212800-96216200	Active TSS	Muscle Satellite Cultured Cells	--
37	chr9:96212800-96216200	Active TSS	Fetal Lung	lung
38	chr9:96212800-96216200	Active TSS	Gastric	stomach
39	chr9:96212800-96216200	Active TSS	Pancreas	Pancrea
40	chr9:96212800-96216200	Active TSS	Rectal Smooth Muscle	rectum
41	chr9:96212800-96216200	Active TSS	Hela-S3	cervix
42	chr9:96212800-96216400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr9:96212800-96216400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr9:96212800-96216400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:96212800-96216400	Active TSS	Esophagus	oesophagus
46	chr9:96212800-96216400	Active TSS	Fetal Intestine Small	intestine
47	chr9:96212800-96216400	Active TSS	Fetal Stomach	stomach
48	chr9:96212800-96216400	Active TSS	Small Intestine	intestine
49	chr9:96212800-96216600	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr9:96212800-96216600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links