Variant report

Variant	rs7864950
Chromosome Location	chr9:96245668-96245669
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96244628..96248113-chr9:96249700..96253077,4	MCF-7	breast:
2	chr9:96239024..96243784-chr9:96244555..96247463,4	K562	blood:
3	chr9:96244084..96246142-chr9:96251969..96254302,2	K562	blood:
4	chr9:96240211..96242392-chr9:96243662..96246042,2	MCF-7	breast:
5	chr9:96235140..96238887-chr9:96245460..96248852,5	K562	blood:
6	chr9:96230020..96231557-chr9:96243930..96246449,2	MCF-7	breast:
7	chr9:96234181..96236763-chr9:96245089..96247624,3	K562	blood:
8	chr9:96239024..96241783-chr9:96243346..96246055,2	K562	blood:
9	chr9:96244925..96246887-chr9:96262831..96264712,2	K562	blood:

No data

rs_ID	r²[population]
rs10115890	0.88[EUR][1000 genomes]
rs10119044	0.88[EUR][1000 genomes]
rs10119048	0.88[EUR][1000 genomes]
rs10120391	0.88[EUR][1000 genomes]
rs10121801	0.88[EUR][1000 genomes]
rs10992730	0.88[EUR][1000 genomes]
rs12345304	0.88[EUR][1000 genomes]
rs12345623	0.88[EUR][1000 genomes]
rs16909145	0.94[EUR][1000 genomes]
rs16909167	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909202	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16909214	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16909243	1.00[AMR][1000 genomes]
rs41274380	0.94[EUR][1000 genomes]
rs41274382	0.94[EUR][1000 genomes]
rs41274392	0.94[EUR][1000 genomes]
rs41274394	0.94[EUR][1000 genomes]
rs6479486	0.94[EUR][1000 genomes]
rs7020585	0.94[EUR][1000 genomes]
rs7027881	0.94[EUR][1000 genomes]
rs7031483	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7035026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73527828	1.00[AMR][1000 genomes]
rs73651207	0.88[EUR][1000 genomes]
rs73651208	0.88[EUR][1000 genomes]
rs7849843	0.88[EUR][1000 genomes]
rs7867699	0.88[EUR][1000 genomes]
rs7868092	0.88[EUR][1000 genomes]
rs7873803	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7875378	0.88[EUR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96231600-96246400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:96231600-96246400	Weak transcription	Spleen	Spleen
4	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
5	chr9:96231600-96256400	Weak transcription	NH-A	brain
6	chr9:96231800-96246400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:96231800-96246600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:96232000-96246400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:96233400-96248000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:96233600-96246400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:96233600-96246400	Weak transcription	Gastric	stomach
14	chr9:96233600-96248600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
16	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:96234000-96250000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
21	chr9:96236000-96246400	Weak transcription	Ovary	ovary
22	chr9:96238200-96248600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:96238400-96246000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr9:96238400-96246400	Weak transcription	NHLF	lung
25	chr9:96238400-96252800	Strong transcription	Placenta	Placenta
26	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:96238800-96246400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:96238800-96246400	Weak transcription	HSMM	muscle
29	chr9:96238800-96256400	Weak transcription	Fetal Kidney	kidney
30	chr9:96239400-96246400	Weak transcription	Brain Anterior Caudate	brain
31	chr9:96239400-96251800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
33	chr9:96240000-96245800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:96240000-96246200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:96240000-96249800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:96240200-96255800	Weak transcription	Fetal Brain Female	brain
37	chr9:96241200-96246000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:96241200-96246400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
40	chr9:96241800-96247800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr9:96241800-96259800	Strong transcription	Dnd41	blood
42	chr9:96242000-96248000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr9:96242200-96246400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:96242200-96248600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr9:96242400-96246400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:96242400-96246400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:96242400-96246400	Weak transcription	HSMMtube	muscle
48	chr9:96242400-96248000	Strong transcription	Liver	Liver
49	chr9:96242400-96248600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:96242600-96246200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links