Variant report

Variant	rs16909167
Chromosome Location	chr9:96223338-96223339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96221028..96223549-chr9:96326289..96328880,2	MCF-7	breast:
2	chr9:96087344..96090243-chr9:96221738..96224312,2	MCF-7	breast:
3	chr9:96222124..96223633-chr9:96240798..96243259,2	K562	blood:
4	chr9:96222346..96224759-chr9:96335297..96339322,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10115890	0.88[EUR][1000 genomes]
rs10119044	0.88[EUR][1000 genomes]
rs10119048	0.88[EUR][1000 genomes]
rs10119086	1.00[JPT][hapmap]
rs10120391	0.88[EUR][1000 genomes]
rs10121801	0.88[EUR][1000 genomes]
rs10992730	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12345304	0.88[EUR][1000 genomes]
rs12345623	0.88[EUR][1000 genomes]
rs16909145	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16909202	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs16909214	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs16909243	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16909308	1.00[AMR][1000 genomes]
rs16912641	1.00[CEU][hapmap]
rs2001587	1.00[AMR][1000 genomes]
rs2001588	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2398854	1.00[AMR][1000 genomes]
rs35505758	1.00[AMR][1000 genomes]
rs41274380	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41274382	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41274392	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41274394	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41274432	1.00[AMR][1000 genomes]
rs60016166	1.00[AMR][1000 genomes]
rs6479486	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7020585	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7027881	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs7031483	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs7035026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522240	1.00[AMR][1000 genomes]
rs73522243	1.00[AMR][1000 genomes]
rs73522271	1.00[AMR][1000 genomes]
rs73522273	1.00[AMR][1000 genomes]
rs73522292	1.00[AMR][1000 genomes]
rs73522296	1.00[AMR][1000 genomes]
rs73523904	1.00[AMR][1000 genomes]
rs73523906	1.00[AMR][1000 genomes]
rs73523907	1.00[AMR][1000 genomes]
rs73523908	1.00[AMR][1000 genomes]
rs73523910	1.00[AMR][1000 genomes]
rs73523917	1.00[AMR][1000 genomes]
rs73651207	0.88[EUR][1000 genomes]
rs73651208	0.88[EUR][1000 genomes]
rs7849843	0.88[EUR][1000 genomes]
rs7864950	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867699	0.88[EUR][1000 genomes]
rs7868092	0.88[EUR][1000 genomes]
rs7870558	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs7873803	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs7875378	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:96216600-96223400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:96216600-96224000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:96216800-96225000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
9	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
10	chr9:96217000-96226200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
12	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:96217400-96230800	Weak transcription	HSMM	muscle
14	chr9:96217600-96226000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
16	chr9:96218400-96223600	Enhancers	Small Intestine	intestine
17	chr9:96218600-96223600	Enhancers	Stomach Mucosa	stomach
18	chr9:96219000-96228000	Weak transcription	HUVEC	blood vessel
19	chr9:96219200-96229000	Weak transcription	NH-A	brain
20	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr9:96219400-96223400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:96219400-96225800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:96219400-96226000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:96220000-96223400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr9:96220000-96223600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr9:96220200-96225000	Enhancers	Colonic Mucosa	Colon
27	chr9:96220400-96223400	Enhancers	Psoas Muscle	Psoas
28	chr9:96220400-96223600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:96220400-96223600	Enhancers	Spleen	Spleen
30	chr9:96220400-96223800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:96220600-96223400	Enhancers	Right Atrium	heart
32	chr9:96220600-96223800	Enhancers	Fetal Heart	heart
33	chr9:96220600-96226600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:96220800-96226200	Enhancers	A549	lung
35	chr9:96220800-96227000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr9:96221000-96223600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:96221000-96223800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:96221000-96223800	Enhancers	Fetal Thymus	thymus
40	chr9:96221200-96225400	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr9:96221200-96225600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:96221200-96228200	Weak transcription	Aorta	Aorta
43	chr9:96221200-96229000	Weak transcription	Osteobl	bone
44	chr9:96221400-96228000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr9:96221600-96223400	Weak transcription	Fetal Intestine Large	intestine
46	chr9:96221600-96224600	Weak transcription	Pancreas	Pancrea
47	chr9:96221600-96224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:96221600-96226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:96221600-96226600	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr9:96221600-96227200	Weak transcription	Gastric	stomach

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