Variant report

Variant	rs73522296
Chromosome Location	chr9:96413798-96413799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96403393..96404983-chr9:96412253..96413930,2	MCF-7	breast:
2	chr9:96411800..96413942-chr9:96415397..96417041,2	K562	blood:
3	chr9:96338588..96340129-chr9:96412677..96415409,2	MCF-7	breast:
4	chr9:96391831..96394155-chr9:96413684..96415869,2	K562	blood:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs16909145	1.00[AMR][1000 genomes]
rs16909167	1.00[AMR][1000 genomes]
rs16909308	1.00[AMR][1000 genomes]
rs16912641	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001587	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001588	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2398854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35505758	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274380	1.00[AMR][1000 genomes]
rs41274382	1.00[AMR][1000 genomes]
rs41274392	1.00[AMR][1000 genomes]
rs41274394	1.00[AMR][1000 genomes]
rs41274432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276200	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57824368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59044538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60016166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61687771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479486	1.00[AMR][1000 genomes]
rs7020585	1.00[AMR][1000 genomes]
rs7027881	1.00[AMR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs7035026	1.00[AMR][1000 genomes]
rs73522240	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522243	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522252	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522271	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522273	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523908	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73527828	1.00[EUR][1000 genomes]
rs7870558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3389059	chr9:96410731-96413929	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3445482	chr9:96410831-96413929	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv972421	chr9:96413056-96428661	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96392200-96423600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:96398200-96413800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:96399000-96423400	Strong transcription	Fetal Intestine Large	intestine
4	chr9:96399400-96423600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr9:96400400-96430600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr9:96401000-96430000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
8	chr9:96401600-96423400	Strong transcription	Adipose Nuclei	Adipose
9	chr9:96401800-96423400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:96402600-96430200	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:96402600-96433600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:96403200-96423000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:96403400-96430800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:96403400-96430800	Strong transcription	Liver	Liver
15	chr9:96404200-96422600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:96405000-96423400	Strong transcription	Fetal Thymus	thymus
17	chr9:96405000-96423800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:96405200-96423600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr9:96405200-96429200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr9:96405200-96431400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr9:96405400-96423000	Strong transcription	Fetal Stomach	stomach
22	chr9:96405400-96423200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:96405400-96423200	Strong transcription	Thymus	Thymus
24	chr9:96405400-96423400	Strong transcription	Brain Angular Gyrus	brain
25	chr9:96405400-96423400	Strong transcription	Dnd41	blood
26	chr9:96405400-96423600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:96405400-96423600	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr9:96405400-96430000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:96405400-96430600	Strong transcription	Primary T cells from cord blood	blood
30	chr9:96405400-96431400	Strong transcription	Fetal Brain Female	brain
31	chr9:96405400-96433200	Strong transcription	Fetal Intestine Small	intestine
32	chr9:96405600-96414200	Strong transcription	Aorta	Aorta
33	chr9:96405600-96423200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:96405600-96423400	Strong transcription	Brain Cingulate Gyrus	brain
35	chr9:96405600-96423400	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:96405600-96429800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr9:96405600-96430000	Strong transcription	Brain Germinal Matrix	brain
38	chr9:96405600-96430400	Strong transcription	Stomach Smooth Muscle	stomach
39	chr9:96405800-96415800	Strong transcription	Left Ventricle	heart
40	chr9:96405800-96417400	Strong transcription	Brain Anterior Caudate	brain
41	chr9:96405800-96423200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:96405800-96423600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr9:96405800-96423800	Strong transcription	Ovary	ovary
44	chr9:96406000-96423200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:96406200-96438600	Weak transcription	Small Intestine	intestine
46	chr9:96406600-96423600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:96406800-96430600	Strong transcription	Brain Hippocampus Middle	brain
48	chr9:96407200-96423000	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr9:96407200-96423400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:96407200-96423400	Strong transcription	Brain Substantia Nigra	brain

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