Variant report

Variant	rs73523933
Chromosome Location	chr9:96435367-96435368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96434498..96437281-chr9:96438650..96440857,2	MCF-7	breast:
2	chr9:96434785..96437496-chr9:96439550..96441266,2	K562	blood:
3	chr9:96434785..96437618-chr9:96438061..96441050,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16909308	1.00[AMR][1000 genomes]
rs16912641	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001587	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001588	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2398854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35505758	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276200	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57824368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59044538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60016166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61687771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs73522240	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522243	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522252	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522271	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522273	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73527828	1.00[EUR][1000 genomes]
rs7870558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3357089	chr9:96431831-96436129	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3421237	chr9:96432531-96436629	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
2	chr9:96406200-96438600	Weak transcription	Small Intestine	intestine
3	chr9:96412600-96439400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:96412600-96442800	Weak transcription	NHDF-Ad	bronchial
5	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:96412800-96442800	Weak transcription	HMEC	breast
7	chr9:96412800-96443600	Weak transcription	Stomach Mucosa	stomach
8	chr9:96413000-96442000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:96413200-96440800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:96413400-96441600	Weak transcription	GM12878-XiMat	blood
12	chr9:96414400-96435800	Weak transcription	HSMM	muscle
13	chr9:96416400-96443400	Weak transcription	HepG2	liver
14	chr9:96417800-96439000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr9:96419200-96440000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:96420800-96435600	Weak transcription	A549	lung
17	chr9:96422000-96439800	Weak transcription	Osteobl	bone
18	chr9:96424800-96440800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:96426000-96441800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:96426200-96436000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:96426200-96436200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr9:96426200-96438000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:96426200-96438000	Weak transcription	HSMMtube	muscle
24	chr9:96426200-96438400	Weak transcription	Fetal Lung	lung
25	chr9:96426200-96438600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr9:96426200-96442200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:96426400-96438800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:96426400-96439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:96426400-96439800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:96426400-96441600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:96426600-96435600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:96426800-96435400	Weak transcription	Brain Substantia Nigra	brain
33	chr9:96428400-96438600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr9:96428800-96436000	Weak transcription	Brain Anterior Caudate	brain
35	chr9:96429000-96435800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr9:96429600-96436000	Weak transcription	Aorta	Aorta
37	chr9:96430000-96435600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:96430000-96436000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr9:96430000-96436600	Weak transcription	Colon Smooth Muscle	Colon
40	chr9:96430000-96438000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:96430200-96435400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:96430200-96436600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:96430200-96436600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:96430400-96435600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:96430600-96435400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:96430600-96436000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:96431400-96440000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:96431400-96441800	Weak transcription	K562	blood
49	chr9:96431600-96436000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:96431800-96436000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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