Variant report

Variant	rs73523944
Chromosome Location	chr9:96441783-96441784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96420113..96421797-chr9:96439753..96442737,2	MCF-7	breast:
2	chr9:96338337..96340643-chr9:96441518..96443236,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16909308	1.00[AMR][1000 genomes]
rs16912641	0.90[EUR][1000 genomes]
rs2001587	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2001588	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2398854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35505758	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41274432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41276200	1.00[AMR][1000 genomes]
rs57824368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59044538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60016166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61687771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs73522240	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73522243	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73522252	0.84[EUR][1000 genomes]
rs73522271	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73522273	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73522292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73527828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96412600-96442800	Weak transcription	NHDF-Ad	bronchial
2	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96412800-96442800	Weak transcription	HMEC	breast
4	chr9:96412800-96443600	Weak transcription	Stomach Mucosa	stomach
5	chr9:96413000-96442000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:96416400-96443400	Weak transcription	HepG2	liver
8	chr9:96426000-96441800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:96426200-96442200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:96431400-96441800	Weak transcription	K562	blood
11	chr9:96434600-96442400	Strong transcription	Fetal Intestine Small	intestine
12	chr9:96434600-96443200	Strong transcription	Fetal Stomach	stomach
13	chr9:96434800-96442400	Strong transcription	Placenta	Placenta
14	chr9:96435000-96442400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:96435000-96442400	Strong transcription	Thymus	Thymus
16	chr9:96435000-96442600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr9:96435000-96442800	Strong transcription	Fetal Muscle Leg	muscle
18	chr9:96435200-96442400	Strong transcription	Brain Germinal Matrix	brain
19	chr9:96435200-96442600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:96435200-96442800	Strong transcription	Fetal Brain Female	brain
21	chr9:96435600-96442400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:96436600-96442600	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr9:96436600-96443800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:96436800-96447000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:96437600-96442600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:96437600-96442600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr9:96437800-96444800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:96438800-96443800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:96439600-96443200	Weak transcription	Psoas Muscle	Psoas
30	chr9:96439600-96444800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:96439800-96442400	Weak transcription	Aorta	Aorta
32	chr9:96439800-96444800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr9:96439800-96444800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:96440000-96442400	Weak transcription	NHEK	skin
35	chr9:96440200-96441800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:96440200-96441800	Weak transcription	Primary B cells from cord blood	blood
37	chr9:96440200-96442200	Strong transcription	Lung	lung
38	chr9:96440200-96444400	Weak transcription	A549	lung
39	chr9:96440400-96442200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr9:96440400-96442400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr9:96440400-96442400	Weak transcription	Osteobl	bone
42	chr9:96440400-96443000	Weak transcription	HSMMtube	muscle
43	chr9:96440400-96444000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr9:96440400-96444200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:96440400-96444400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr9:96440400-96444800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:96440600-96442200	Weak transcription	Colon Smooth Muscle	Colon
48	chr9:96440600-96442400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:96440600-96442400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:96440600-96442400	Weak transcription	Brain Hippocampus Middle	brain

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