Variant report

Variant	rs73522271
Chromosome Location	chr9:96400073-96400074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96347655..96349520-chr9:96399670..96402056,2	K562	blood:
2	chr9:96328888..96330785-chr9:96400006..96401542,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12553775	0.81[AFR][1000 genomes]
rs16909145	1.00[AMR][1000 genomes]
rs16909167	1.00[AMR][1000 genomes]
rs16909308	1.00[AMR][1000 genomes]
rs16912641	1.00[ASN][1000 genomes]
rs2001587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2398854	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35505758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274380	1.00[AMR][1000 genomes]
rs41274382	1.00[AMR][1000 genomes]
rs41274392	1.00[AMR][1000 genomes]
rs41274394	1.00[AMR][1000 genomes]
rs41274432	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276200	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57824368	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59044538	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60016166	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61687771	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6479486	1.00[AMR][1000 genomes]
rs7020585	1.00[AMR][1000 genomes]
rs7027881	1.00[AMR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs7035026	1.00[AMR][1000 genomes]
rs73522240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522252	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522296	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523904	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523906	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523907	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523908	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523910	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523917	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523922	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523932	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523933	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523934	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523942	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523944	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73523946	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73527828	0.89[EUR][1000 genomes]
rs7870558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1055035	chr9:96372269-96402747	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96384600-96412200	Weak transcription	Stomach Mucosa	stomach
3	chr9:96387000-96411800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:96390200-96405400	Weak transcription	HepG2	liver
5	chr9:96391400-96400800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr9:96391600-96400200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:96391600-96400200	Strong transcription	Gastric	stomach
8	chr9:96391600-96402000	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr9:96391800-96400400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:96391800-96400400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:96391800-96402400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:96391800-96402400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:96391800-96402400	Strong transcription	Placenta	Placenta
14	chr9:96392000-96400200	Strong transcription	Pancreas	Pancrea
15	chr9:96392000-96400400	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr9:96392000-96403400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr9:96392200-96402200	Strong transcription	Duodenum Mucosa	Duodenum
18	chr9:96392200-96402200	Strong transcription	Stomach Smooth Muscle	stomach
19	chr9:96392200-96403800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr9:96392200-96412000	Weak transcription	HMEC	breast
21	chr9:96392200-96423600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr9:96392400-96402600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr9:96392400-96402600	Strong transcription	Liver	Liver
24	chr9:96393200-96402800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:96393600-96400800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:96393600-96406600	Weak transcription	GM12878-XiMat	blood
27	chr9:96393800-96400200	Strong transcription	Spleen	Spleen
28	chr9:96396000-96400600	Strong transcription	Placenta Amnion	Placenta Amnion
29	chr9:96396400-96402200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr9:96396400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:96397200-96407800	Weak transcription	NHEK	skin
32	chr9:96397400-96400400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:96397400-96400800	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr9:96397400-96402400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:96397800-96400600	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:96397800-96400800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:96398000-96400200	Strong transcription	Colon Smooth Muscle	Colon
38	chr9:96398000-96400400	Strong transcription	Brain Angular Gyrus	brain
39	chr9:96398000-96402400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:96398000-96403400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:96398200-96400200	ZNF genes & repeats	Fetal Stomach	stomach
42	chr9:96398200-96400400	Strong transcription	Left Ventricle	heart
43	chr9:96398200-96400600	ZNF genes & repeats	Dnd41	blood
44	chr9:96398200-96400800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
45	chr9:96398200-96401000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr9:96398200-96402200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:96398200-96402600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr9:96398200-96411200	Weak transcription	HUVEC	blood vessel
49	chr9:96398200-96413800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr9:96398400-96400200	ZNF genes & repeats	Brain Germinal Matrix	brain

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