Variant report

Variant	rs35505758
Chromosome Location	chr9:96407953-96407954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96338642..96340573-chr9:96407100..96409295,2	K562	blood:
2	chr9:96394612..96397512-chr9:96407900..96409512,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12553775	0.81[AFR][1000 genomes]
rs16909145	1.00[AMR][1000 genomes]
rs16909167	1.00[AMR][1000 genomes]
rs16909308	1.00[AMR][1000 genomes]
rs16912641	1.00[ASN][1000 genomes]
rs2001587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2398854	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274380	1.00[AMR][1000 genomes]
rs41274382	1.00[AMR][1000 genomes]
rs41274392	1.00[AMR][1000 genomes]
rs41274394	1.00[AMR][1000 genomes]
rs41274432	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276200	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57824368	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59044538	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60016166	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61687771	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6479486	1.00[AMR][1000 genomes]
rs7020585	1.00[AMR][1000 genomes]
rs7027881	1.00[AMR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs7035026	1.00[AMR][1000 genomes]
rs73522240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522252	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522296	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523904	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523906	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523907	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523908	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523910	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523917	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523922	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523932	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523933	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523934	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523942	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523944	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73523946	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73527828	0.89[EUR][1000 genomes]
rs7870558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96384600-96412200	Weak transcription	Stomach Mucosa	stomach
3	chr9:96387000-96411800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:96392200-96412000	Weak transcription	HMEC	breast
5	chr9:96392200-96423600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:96396400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:96398200-96411200	Weak transcription	HUVEC	blood vessel
8	chr9:96398200-96413800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:96399000-96423400	Strong transcription	Fetal Intestine Large	intestine
10	chr9:96399400-96423600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr9:96400200-96412000	Weak transcription	Hela-S3	cervix
12	chr9:96400400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:96400400-96412000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:96400400-96430600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:96400600-96411600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:96400600-96411800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:96400600-96412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:96400800-96411800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:96400800-96411800	Weak transcription	Fetal Brain Male	brain
20	chr9:96400800-96411800	Weak transcription	K562	blood
21	chr9:96401000-96409000	Weak transcription	Primary B cells from cord blood	blood
22	chr9:96401000-96411800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:96401000-96411800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:96401000-96411800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:96401000-96411800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:96401000-96412000	Weak transcription	A549	lung
27	chr9:96401000-96430000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
29	chr9:96401600-96423400	Strong transcription	Adipose Nuclei	Adipose
30	chr9:96401800-96411800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:96401800-96423400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:96402200-96411600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:96402400-96411800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:96402400-96411800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr9:96402600-96430200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:96402600-96433600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:96402800-96411800	Weak transcription	Fetal Kidney	kidney
38	chr9:96403200-96412000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:96403200-96423000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:96403400-96430800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:96403400-96430800	Strong transcription	Liver	Liver
42	chr9:96403600-96409200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr9:96403800-96412600	Strong transcription	Placenta	Placenta
44	chr9:96404200-96409600	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr9:96404200-96422600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr9:96405000-96423400	Strong transcription	Fetal Thymus	thymus
47	chr9:96405000-96423800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr9:96405200-96423600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr9:96405200-96429200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr9:96405200-96431400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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