Variant report

Variant	rs73523932
Chromosome Location	chr9:96434774-96434775
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96434498..96437281-chr9:96438650..96440857,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16909308	1.00[AMR][1000 genomes]
rs16912641	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001587	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001588	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2398854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35505758	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276200	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57824368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59044538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60016166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61687771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs73522240	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522243	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522252	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522271	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522273	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523908	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73527828	1.00[EUR][1000 genomes]
rs7870558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3357089	chr9:96431831-96436129	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1806172	chr9:96432418-96434806	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1846506	chr9:96432418-96434806	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3421237	chr9:96432531-96436629	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1821232	chr9:96432811-96434806	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1829826	chr9:96432811-96434806	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1793558	chr9:96433101-96434806	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv10878	chr9:96433251-96435331	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
2	chr9:96406200-96438600	Weak transcription	Small Intestine	intestine
3	chr9:96412600-96439400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:96412600-96442800	Weak transcription	NHDF-Ad	bronchial
5	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:96412800-96442800	Weak transcription	HMEC	breast
7	chr9:96412800-96443600	Weak transcription	Stomach Mucosa	stomach
8	chr9:96413000-96442000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:96413200-96440800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:96413400-96441600	Weak transcription	GM12878-XiMat	blood
12	chr9:96414200-96434800	Weak transcription	Right Atrium	heart
13	chr9:96414400-96435800	Weak transcription	HSMM	muscle
14	chr9:96416400-96443400	Weak transcription	HepG2	liver
15	chr9:96417800-96439000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:96419200-96440000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:96420800-96435600	Weak transcription	A549	lung
18	chr9:96422000-96439800	Weak transcription	Osteobl	bone
19	chr9:96424800-96440800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr9:96426000-96441800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr9:96426200-96434800	Weak transcription	Fetal Heart	heart
22	chr9:96426200-96434800	Weak transcription	Fetal Kidney	kidney
23	chr9:96426200-96435200	Weak transcription	Primary B cells from cord blood	blood
24	chr9:96426200-96435200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:96426200-96436000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:96426200-96436200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr9:96426200-96438000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:96426200-96438000	Weak transcription	HSMMtube	muscle
29	chr9:96426200-96438400	Weak transcription	Fetal Lung	lung
30	chr9:96426200-96438600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:96426200-96442200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:96426400-96438800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:96426400-96439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:96426400-96439800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:96426400-96441600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:96426600-96435600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr9:96426800-96435400	Weak transcription	Brain Substantia Nigra	brain
38	chr9:96428400-96438600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr9:96428600-96435000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr9:96428600-96435200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:96428600-96435200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:96428800-96434800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:96428800-96435000	Weak transcription	Brain Angular Gyrus	brain
44	chr9:96428800-96435200	Weak transcription	NHLF	lung
45	chr9:96428800-96436000	Weak transcription	Brain Anterior Caudate	brain
46	chr9:96429000-96435200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr9:96429000-96435200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr9:96429000-96435800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr9:96429200-96435000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr9:96429600-96436000	Weak transcription	Aorta	Aorta

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