Variant report

Variant	rs73527828
Chromosome Location	chr9:96447654-96447655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16909202	1.00[AMR][1000 genomes]
rs16909214	1.00[AMR][1000 genomes]
rs16909243	1.00[AMR][1000 genomes]
rs16912641	0.90[EUR][1000 genomes]
rs2001587	0.89[EUR][1000 genomes]
rs2001588	0.89[EUR][1000 genomes]
rs2398854	1.00[EUR][1000 genomes]
rs35505758	0.89[EUR][1000 genomes]
rs41274432	1.00[EUR][1000 genomes]
rs57824368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59044538	1.00[EUR][1000 genomes]
rs60016166	1.00[EUR][1000 genomes]
rs61687771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031483	1.00[AMR][1000 genomes]
rs73522240	0.89[EUR][1000 genomes]
rs73522243	0.89[EUR][1000 genomes]
rs73522252	0.84[EUR][1000 genomes]
rs73522271	0.89[EUR][1000 genomes]
rs73522273	0.89[EUR][1000 genomes]
rs73522292	1.00[EUR][1000 genomes]
rs73522296	1.00[EUR][1000 genomes]
rs73523904	1.00[EUR][1000 genomes]
rs73523906	1.00[EUR][1000 genomes]
rs73523907	1.00[EUR][1000 genomes]
rs73523908	1.00[EUR][1000 genomes]
rs73523910	1.00[EUR][1000 genomes]
rs73523917	1.00[EUR][1000 genomes]
rs73523922	1.00[EUR][1000 genomes]
rs73523932	1.00[EUR][1000 genomes]
rs73523933	1.00[EUR][1000 genomes]
rs73523934	1.00[EUR][1000 genomes]
rs73523942	1.00[EUR][1000 genomes]
rs73523944	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73523946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864950	1.00[AMR][1000 genomes]
rs7873803	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96442800-96449200	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:96444200-96449400	Enhancers	Fetal Stomach	stomach
3	chr9:96446600-96448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96446800-96448200	Enhancers	HUVEC	blood vessel
5	chr9:96447200-96448600	Enhancers	Stomach Smooth Muscle	stomach
6	chr9:96447400-96447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:96447600-96447800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:96447600-96447800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:96447600-96447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:96447600-96447800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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