Variant report

Variant	rs16909243
Chromosome Location	chr9:96279823-96279824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96279743..96281562-chr9:96285341..96286993,2	MCF-7	breast:
2	chr9:96278724..96281294-chr9:96283081..96285331,2	MCF-7	breast:
3	chr9:96093858..96095483-chr9:96278870..96281860,2	MCF-7	breast:
4	chr9:96279483..96281211-chr9:96337291..96339957,2	MCF-7	breast:
5	chr9:96213930..96217178-chr9:96278961..96280917,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10119086	1.00[JPT][hapmap]
rs10992730	1.00[CEU][hapmap]
rs12345288	0.87[EUR][1000 genomes]
rs16909145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16909167	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16909202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16909214	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16909308	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912641	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2001588	1.00[CEU][hapmap]
rs6479486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7020585	1.00[CEU][hapmap]
rs7030805	1.00[EUR][1000 genomes]
rs7031483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7035026	0.81[AFR][1000 genomes]
rs7043966	0.90[ASN][1000 genomes]
rs73527828	1.00[AMR][1000 genomes]
rs7864950	1.00[AMR][1000 genomes]
rs7870558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
9	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:96264000-96280400	Weak transcription	Colonic Mucosa	Colon
11	chr9:96264000-96281600	Weak transcription	Aorta	Aorta
12	chr9:96264000-96286600	Weak transcription	NH-A	brain
13	chr9:96264200-96281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
15	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
16	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:96268000-96286400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:96268600-96282200	Weak transcription	Osteobl	bone
19	chr9:96270800-96285400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr9:96271600-96282200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:96273800-96286600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:96274000-96291000	Weak transcription	Small Intestine	intestine
24	chr9:96274200-96280000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:96275800-96280000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:96275800-96280000	Weak transcription	NHLF	lung
27	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
29	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:96276200-96280000	Weak transcription	Lung	lung
31	chr9:96276200-96280000	Weak transcription	Pancreas	Pancrea
32	chr9:96276200-96280000	Weak transcription	Spleen	Spleen
33	chr9:96276200-96286000	Weak transcription	Colon Smooth Muscle	Colon
34	chr9:96276200-96287800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:96276200-96290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
37	chr9:96276400-96280000	Weak transcription	Gastric	stomach
38	chr9:96277200-96280200	Weak transcription	Psoas Muscle	Psoas
39	chr9:96277200-96280200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:96277200-96280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:96277200-96280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:96277400-96280000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:96277400-96280200	Weak transcription	Right Ventricle	heart
44	chr9:96277400-96280800	Weak transcription	Fetal Brain Female	brain
45	chr9:96277400-96282800	Weak transcription	Right Atrium	heart
46	chr9:96277400-96284200	Weak transcription	Fetal Heart	heart
47	chr9:96278200-96283200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:96278200-96283200	Strong transcription	Thymus	Thymus
49	chr9:96278200-96283400	Strong transcription	Fetal Muscle Leg	muscle
50	chr9:96278200-96283600	Strong transcription	Dnd41	blood

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