Variant report

Variant	rs7870558
Chromosome Location	chr9:96284396-96284397
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96283749..96287240-chr9:96288399..96291092,3	K562	blood:
2	chr9:96278724..96281294-chr9:96283081..96285331,2	MCF-7	breast:
3	chr9:96283725..96286210-chr9:96295054..96296759,2	MCF-7	breast:
4	chr9:96283779..96285803-chr9:96306201..96308821,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10119086	1.00[JPT][hapmap]
rs10992730	1.00[CEU][hapmap]
rs12345288	0.87[EUR][1000 genomes]
rs16909145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16909167	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16909202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16909214	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16909243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909308	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912641	1.00[CEU][hapmap]
rs2001587	1.00[AMR][1000 genomes]
rs2001588	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2398854	1.00[AMR][1000 genomes]
rs35505758	1.00[AMR][1000 genomes]
rs41274380	1.00[AMR][1000 genomes]
rs41274382	1.00[AMR][1000 genomes]
rs41274392	1.00[AMR][1000 genomes]
rs41274394	1.00[AMR][1000 genomes]
rs41274432	1.00[AMR][1000 genomes]
rs41276200	1.00[AMR][1000 genomes]
rs57824368	1.00[AMR][1000 genomes]
rs59044538	1.00[AMR][1000 genomes]
rs60016166	1.00[AMR][1000 genomes]
rs61687771	1.00[AMR][1000 genomes]
rs6479486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7020585	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs7027881	1.00[AMR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7031483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7035026	1.00[AMR][1000 genomes]
rs7043966	0.90[ASN][1000 genomes]
rs73522240	1.00[AMR][1000 genomes]
rs73522243	1.00[AMR][1000 genomes]
rs73522271	1.00[AMR][1000 genomes]
rs73522273	1.00[AMR][1000 genomes]
rs73522292	1.00[AMR][1000 genomes]
rs73522296	1.00[AMR][1000 genomes]
rs73523904	1.00[AMR][1000 genomes]
rs73523906	1.00[AMR][1000 genomes]
rs73523907	1.00[AMR][1000 genomes]
rs73523908	1.00[AMR][1000 genomes]
rs73523910	1.00[AMR][1000 genomes]
rs73523917	1.00[AMR][1000 genomes]
rs73523922	1.00[AMR][1000 genomes]
rs73523932	1.00[AMR][1000 genomes]
rs73523933	1.00[AMR][1000 genomes]
rs73523934	1.00[AMR][1000 genomes]
rs73523942	1.00[AMR][1000 genomes]
rs73523944	1.00[AMR][1000 genomes]
rs73523946	1.00[AMR][1000 genomes]
rs7873803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7875378	1.00[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
9	chr9:96264000-96286600	Weak transcription	NH-A	brain
10	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
11	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
12	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:96268000-96286400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:96270800-96285400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:96273800-96286600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:96274000-96291000	Weak transcription	Small Intestine	intestine
18	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
20	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:96276200-96286000	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:96276200-96287800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:96276200-96290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
25	chr9:96278200-96284400	Strong transcription	Fetal Intestine Large	intestine
26	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr9:96278800-96286800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
33	chr9:96279000-96297400	Strong transcription	HepG2	liver
34	chr9:96279000-96298600	Strong transcription	GM12878-XiMat	blood
35	chr9:96279000-96310400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr9:96280000-96288200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr9:96280600-96285400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:96280600-96285600	Weak transcription	HMEC	breast
40	chr9:96281000-96285000	Weak transcription	Brain Angular Gyrus	brain
41	chr9:96281000-96285000	Weak transcription	A549	lung
42	chr9:96281000-96285400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:96281000-96285600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr9:96281000-96285800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr9:96281200-96285000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr9:96281200-96285000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:96281200-96285600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:96281200-96285600	Weak transcription	NHEK	skin
49	chr9:96281200-96286800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr9:96281200-96287600	Weak transcription	Brain Substantia Nigra	brain

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