Variant report

Variant	rs6479486
Chromosome Location	chr9:96226164-96226165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96223838..96225399-chr9:96225606..96227338,2	K562	blood:
2	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
3	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:
4	chr9:96224590..96228623-chr9:96232472..96235685,5	K562	blood:
5	chr9:96224023..96227190-chr9:96336323..96339584,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10115890	0.94[EUR][1000 genomes]
rs10119044	0.94[EUR][1000 genomes]
rs10119048	0.94[EUR][1000 genomes]
rs10119086	1.00[JPT][hapmap]
rs10120391	0.94[EUR][1000 genomes]
rs10121801	0.94[EUR][1000 genomes]
rs10992730	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12345304	0.94[EUR][1000 genomes]
rs12345623	0.94[EUR][1000 genomes]
rs16909145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909167	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16909202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909214	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16909308	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16912641	1.00[CEU][hapmap]
rs2001587	1.00[AMR][1000 genomes]
rs2001588	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2398854	1.00[AMR][1000 genomes]
rs35505758	1.00[AMR][1000 genomes]
rs41274380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274432	1.00[AMR][1000 genomes]
rs60016166	1.00[AMR][1000 genomes]
rs7020585	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030805	1.00[AMR][1000 genomes]
rs7031483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035026	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7043966	0.90[ASN][1000 genomes]
rs73522240	1.00[AMR][1000 genomes]
rs73522243	1.00[AMR][1000 genomes]
rs73522271	1.00[AMR][1000 genomes]
rs73522273	1.00[AMR][1000 genomes]
rs73522292	1.00[AMR][1000 genomes]
rs73522296	1.00[AMR][1000 genomes]
rs73523904	1.00[AMR][1000 genomes]
rs73523906	1.00[AMR][1000 genomes]
rs73523907	1.00[AMR][1000 genomes]
rs73523908	1.00[AMR][1000 genomes]
rs73523910	1.00[AMR][1000 genomes]
rs73523917	1.00[AMR][1000 genomes]
rs73523922	1.00[AMR][1000 genomes]
rs73651207	0.94[EUR][1000 genomes]
rs73651208	0.94[EUR][1000 genomes]
rs7849843	0.94[EUR][1000 genomes]
rs7864950	0.94[EUR][1000 genomes]
rs7867699	0.94[EUR][1000 genomes]
rs7868092	0.94[EUR][1000 genomes]
rs7870558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7873803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875378	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
6	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
7	chr9:96217000-96226200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
9	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:96217400-96230800	Weak transcription	HSMM	muscle
11	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
12	chr9:96219000-96228000	Weak transcription	HUVEC	blood vessel
13	chr9:96219200-96229000	Weak transcription	NH-A	brain
14	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr9:96220600-96226600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr9:96220800-96226200	Enhancers	A549	lung
17	chr9:96220800-96227000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr9:96221200-96228200	Weak transcription	Aorta	Aorta
20	chr9:96221200-96229000	Weak transcription	Osteobl	bone
21	chr9:96221400-96228000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:96221600-96226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:96221600-96226600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr9:96221600-96227200	Weak transcription	Gastric	stomach
25	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:96221800-96226600	Weak transcription	Fetal Lung	lung
27	chr9:96222000-96226800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr9:96222000-96226800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr9:96222000-96228000	Weak transcription	Brain Angular Gyrus	brain
30	chr9:96222000-96228200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:96222000-96228600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:96222200-96226200	Weak transcription	Fetal Intestine Small	intestine
33	chr9:96222200-96226600	Weak transcription	Right Ventricle	heart
34	chr9:96222200-96227000	Weak transcription	Brain Anterior Caudate	brain
35	chr9:96222200-96227200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:96222200-96227200	Weak transcription	Adipose Nuclei	Adipose
37	chr9:96222200-96227400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:96222200-96228000	Weak transcription	Esophagus	oesophagus
39	chr9:96222200-96228000	Weak transcription	Fetal Muscle Leg	muscle
40	chr9:96222200-96228000	Weak transcription	Ovary	ovary
41	chr9:96222200-96228200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:96222200-96228200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:96222200-96228800	Weak transcription	NHLF	lung
44	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:96222400-96226200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr9:96222800-96230000	Enhancers	Primary hematopoietic stem cells	blood
48	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr9:96223000-96226200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr9:96223000-96228000	Weak transcription	Lung	lung

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