Variant report

Variant	rs928369
Chromosome Location	chr9:96348289-96348290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96341833..96343358-chr9:96346773..96348583,2	K562	blood:
2	chr9:96347503..96349844-chr9:96352338..96353951,2	K562	blood:
3	chr9:96346772..96349327-chr9:96380904..96383527,2	MCF-7	breast:
4	chr9:96338500..96340804-chr9:96346682..96348617,3	K562	blood:
5	chr9:96347655..96349520-chr9:96399670..96402056,2	K562	blood:
6	chr9:96331225..96334018-chr9:96347470..96349122,2	K562	blood:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10114689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116955	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122030	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992814	0.91[CHB][hapmap]
rs10992816	0.91[CHB][hapmap]
rs10992821	0.86[CHB][hapmap]
rs10992824	0.90[CHB][hapmap]
rs10992826	0.91[CHB][hapmap]
rs10992838	0.90[CHB][hapmap]
rs11999013	1.00[CEU][hapmap]
rs12235863	0.90[CHB][hapmap]
rs12237139	0.90[CHB][hapmap]
rs16912647	0.91[CHB][hapmap]
rs1806673	0.91[CHB][hapmap]
rs2150751	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150752	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2398852	0.90[CHB][hapmap]
rs2841682	0.82[CEU][hapmap]
rs3750356	0.90[CHB][hapmap]
rs3750360	0.91[CHB][hapmap]
rs7040568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864091	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9644970	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96340400-96351200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:96340600-96351600	Weak transcription	Thymus	Thymus
3	chr9:96341000-96348800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:96341200-96351200	Weak transcription	NHDF-Ad	bronchial
5	chr9:96341400-96350200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:96341400-96356000	Weak transcription	Hela-S3	cervix
7	chr9:96341600-96351600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr9:96341600-96359600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr9:96341800-96362200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:96342200-96359600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:96342600-96357800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:96343400-96360600	Weak transcription	Dnd41	blood
13	chr9:96343600-96350000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:96343800-96349200	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:96344000-96348400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:96344200-96348400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:96344600-96348600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:96344800-96348400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:96344800-96348400	Weak transcription	Brain Angular Gyrus	brain
20	chr9:96344800-96348600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:96344800-96348600	Weak transcription	Fetal Brain Male	brain
22	chr9:96344800-96349000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr9:96344800-96356400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:96345000-96349800	Weak transcription	Placenta	Placenta
25	chr9:96345000-96350000	Weak transcription	K562	blood
26	chr9:96345000-96351200	Weak transcription	Adipose Nuclei	Adipose
27	chr9:96345000-96351400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr9:96345000-96355000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr9:96345000-96356400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:96345000-96362600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr9:96345200-96348400	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:96345200-96350400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:96345200-96351200	Weak transcription	Fetal Lung	lung
34	chr9:96345400-96351200	Weak transcription	HSMMtube	muscle
35	chr9:96345400-96351400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr9:96345600-96350000	Weak transcription	Stomach Mucosa	stomach
37	chr9:96345600-96351600	Weak transcription	Fetal Intestine Large	intestine
38	chr9:96345600-96351800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr9:96346400-96348400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr9:96347400-96348400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:96347400-96349200	Enhancers	Esophagus	oesophagus
42	chr9:96347400-96352200	Enhancers	Psoas Muscle	Psoas
43	chr9:96347400-96353800	Enhancers	Ovary	ovary
44	chr9:96347400-96355400	Enhancers	Pancreas	Pancrea
45	chr9:96347400-96359000	Enhancers	Left Ventricle	heart
46	chr9:96347600-96348400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:96347600-96348400	Weak transcription	Fetal Brain Female	brain
48	chr9:96347600-96348600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:96347600-96348800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr9:96347600-96349400	Genic enhancers	Stomach Smooth Muscle	stomach

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