Variant report

Variant	rs11999013
Chromosome Location	chr9:96154352-96154353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10114689	1.00[CEU][hapmap]
rs10122030	0.93[CEU][hapmap]
rs10992715	0.84[ASW][hapmap];0.82[GIH][hapmap]
rs2150752	0.93[CEU][hapmap]
rs2841682	0.83[CEU][hapmap]
rs4112205	1.00[JPT][hapmap]
rs7040568	1.00[CEU][hapmap]
rs7041943	1.00[CEU][hapmap]
rs928369	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11999013	FAM120A	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96153200-96155200	Enhancers	Colonic Mucosa	Colon
2	chr9:96153200-96156200	Enhancers	Placenta	Placenta
3	chr9:96153400-96161000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96153600-96154800	Enhancers	Fetal Intestine Large	intestine
5	chr9:96153600-96155400	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr9:96153600-96156000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr9:96153800-96154600	Enhancers	Duodenum Mucosa	Duodenum
8	chr9:96154000-96154800	Enhancers	Fetal Intestine Small	intestine
9	chr9:96154200-96154400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr9:96154200-96154800	Active TSS	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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