Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95895210..95897945-chr9:96130128..96133625,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131669	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10821156	1.00[CEU][hapmap]
rs11999013	0.84[ASW][hapmap];0.82[GIH][hapmap]
rs12002078	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12004484	0.86[AMR][1000 genomes]
rs12550993	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs13293140	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13296817	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2254351	1.00[CEU][hapmap]
rs4743925	1.00[CEU][hapmap]
rs4743926	1.00[CEU][hapmap]
rs4744244	1.00[CEU][hapmap]
rs56833280	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58361139	0.83[AMR][1000 genomes]
rs6479471	0.82[ASW][hapmap]
rs6479474	0.82[ASW][hapmap];0.87[CEU][hapmap]
rs6479489	1.00[CEU][hapmap]
rs6479490	1.00[CEU][hapmap]
rs6479491	1.00[CEU][hapmap]
rs7021710	0.88[CEU][hapmap];0.82[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs7042943	0.87[CEU][hapmap]
rs7046002	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7850794	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs928367	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96133200-96134400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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