Variant report
| Variant | rs7021710 |
|---|---|
| Chromosome Location | chr9:96141734-96141735 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:96141441..96144110-chr9:96213292..96215607,4 | MCF-7 | breast: | |
| 2 | chr9:96141185..96143108-chr9:96213449..96215774,3 | MCF-7 | breast: | |
| 3 | chr9:96131323..96133255-chr9:96141524..96143959,2 | MCF-7 | breast: | |
| 4 | chr9:96102856..96105406-chr9:96141051..96143168,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000048828 | Chromatin interaction |
| ENSG00000188938 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10821156 | 0.87[CEU][hapmap] |
| rs10821161 | 0.88[CEU][hapmap] |
| rs10992715 | 0.88[CEU][hapmap];0.82[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap] |
| rs12002078 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12003673 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs12004484 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12550993 | 0.88[CEU][hapmap] |
| rs13289948 | 0.94[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs13296817 | 0.88[CEU][hapmap] |
| rs2254351 | 0.88[CEU][hapmap] |
| rs35925631 | 0.91[AFR][1000 genomes] |
| rs4743925 | 0.88[CEU][hapmap] |
| rs4743926 | 0.88[CEU][hapmap] |
| rs4744244 | 0.88[CEU][hapmap] |
| rs6479489 | 0.88[CEU][hapmap] |
| rs6479490 | 0.88[CEU][hapmap] |
| rs6479491 | 0.88[CEU][hapmap] |
| rs7046002 | 0.88[CEU][hapmap] |
| rs928367 | 0.88[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893576 | chr9:95789960-96158277 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
