Variant report

Variant	rs12002078
Chromosome Location	chr9:96149408-96149409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10992715	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12004484	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13293140	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56833280	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7021710	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7850794	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96148600-96153200	Weak transcription	Placenta	Placenta
2	chr9:96149400-96150000	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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