Variant report

Variant	rs4744244
Chromosome Location	chr9:96242455-96242456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96235019..96236659-chr9:96239668..96242466,2	K562	blood:
2	chr9:96233835..96235400-chr9:96241392..96243582,2	K562	blood:
3	chr9:96222124..96223633-chr9:96240798..96243259,2	K562	blood:
4	chr9:96220347..96222637-chr9:96242128..96243998,2	MCF-7	breast:
5	chr9:96232297..96234859-chr9:96241804..96243993,2	MCF-7	breast:
6	chr9:96241899..96244084-chr9:96246554..96249492,2	MCF-7	breast:
7	chr9:96211777..96216293-chr9:96240145..96244458,5	MCF-7	breast:
8	chr9:96239024..96243784-chr9:96244555..96247463,4	K562	blood:
9	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10733748	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821156	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10821161	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs10992715	1.00[CEU][hapmap]
rs12550993	1.00[CEU][hapmap]
rs13296817	1.00[CEU][hapmap]
rs2126904	0.94[EUR][1000 genomes]
rs2244422	0.98[EUR][1000 genomes]
rs2254351	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2258456	0.87[EUR][1000 genomes]
rs4743925	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4743926	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4744241	1.00[YRI][hapmap]
rs4744256	0.80[AMR][1000 genomes]
rs6479474	0.87[CEU][hapmap]
rs6479489	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479490	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6479491	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7021710	0.88[CEU][hapmap]
rs7032614	1.00[ASW][hapmap]
rs7042943	0.87[CEU][hapmap]
rs7046002	1.00[CEU][hapmap]
rs928367	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs9409478	1.00[MEX][hapmap];0.80[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4744244	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96230000-96244800	Weak transcription	Thymus	Thymus
3	chr9:96231600-96242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:96231600-96242600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:96231600-96242600	Weak transcription	Lung	lung
6	chr9:96231600-96242600	Weak transcription	Right Atrium	heart
7	chr9:96231600-96244800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:96231600-96244800	Weak transcription	Aorta	Aorta
9	chr9:96231600-96246400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:96231600-96246400	Weak transcription	Spleen	Spleen
11	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
12	chr9:96231600-96256400	Weak transcription	NH-A	brain
13	chr9:96231800-96245000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:96231800-96246400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:96231800-96246600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:96232000-96246400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:96233400-96242800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:96233400-96248000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:96233600-96243000	Weak transcription	Left Ventricle	heart
22	chr9:96233600-96245000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:96233600-96246400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr9:96233600-96246400	Weak transcription	Gastric	stomach
25	chr9:96233600-96248600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr9:96233800-96244800	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:96233800-96245000	Weak transcription	Brain Substantia Nigra	brain
28	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
29	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:96234000-96250000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr9:96234400-96243400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
35	chr9:96236000-96242600	Weak transcription	Psoas Muscle	Psoas
36	chr9:96236000-96243200	Weak transcription	Esophagus	oesophagus
37	chr9:96236000-96246400	Weak transcription	Ovary	ovary
38	chr9:96236400-96243200	Strong transcription	Primary T cells from cord blood	blood
39	chr9:96236800-96243400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:96237200-96243000	Strong transcription	Primary B cells from cord blood	blood
41	chr9:96238200-96242800	Strong transcription	HMEC	breast
42	chr9:96238200-96248600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr9:96238400-96243000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:96238400-96246000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr9:96238400-96246400	Weak transcription	NHLF	lung
46	chr9:96238400-96252800	Strong transcription	Placenta	Placenta
47	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:96238800-96242600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:96238800-96246400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:96238800-96246400	Weak transcription	HSMM	muscle

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