Variant report

Variant	rs2244422
Chromosome Location	chr9:96212329-96212330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96212024..96217170-chr9:96326121..96330116,7	MCF-7	breast:
2	chr9:96211528..96214948-chr9:96337573..96343441,10	MCF-7	breast:
3	chr9:96069590..96071864-chr9:96210674..96213644,2	MCF-7	breast:
4	chr9:96210381..96218248-chr9:96327402..96333234,10	MCF-7	breast:
5	chr9:95857571..95862229-chr9:96211597..96216359,5	K562	blood:
6	chr9:96196696..96199442-chr9:96211213..96213936,2	K562	blood:
7	chr9:96211603..96213302-chr9:96293389..96295575,2	MCF-7	breast:
8	chr17:57917246..57919859-chr9:96211459..96213785,2	MCF-7	breast:
9	chr9:95820491..95823416-chr9:96211285..96213612,2	K562	blood:
10	chr9:96072987..96083429-chr9:96209751..96218385,15	MCF-7	breast:
11	chr9:96176371..96177896-chr9:96210682..96213241,2	MCF-7	breast:
12	chr1:209720785..209723139-chr9:96211827..96213695,2	MCF-7	breast:
13	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000227603	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000263875	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000224260	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000157303	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10733748	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10821156	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2126904	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2254351	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2258456	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743925	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4743926	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4744244	0.98[EUR][1000 genomes]
rs6479489	0.98[EUR][1000 genomes]
rs6479490	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479491	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs928367	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2244422	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96197000-96212400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:96198000-96212600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:96207400-96212400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:96208200-96212400	Strong transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:96208200-96212600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:96208400-96213000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:96208600-96212400	Weak transcription	Fetal Heart	heart
8	chr9:96210200-96212400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:96210400-96212400	Weak transcription	HSMM	muscle
10	chr9:96210400-96212400	Weak transcription	NHEK	skin
11	chr9:96210400-96212600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:96210400-96212600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:96210400-96212600	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:96210400-96212600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:96210400-96212600	Weak transcription	HSMMtube	muscle
16	chr9:96210400-96212600	Weak transcription	NHDF-Ad	bronchial
17	chr9:96210600-96212400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:96210600-96212400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:96210600-96212400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:96210600-96212400	Weak transcription	Spleen	Spleen
21	chr9:96210600-96212400	Weak transcription	NH-A	brain
22	chr9:96210600-96212600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:96210800-96212400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:96210800-96212400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:96210800-96212400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:96210800-96212400	Weak transcription	Right Ventricle	heart
27	chr9:96210800-96212400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:96210800-96212400	Weak transcription	Osteobl	bone
29	chr9:96210800-96212600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:96210800-96212600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:96210800-96212600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr9:96210800-96212600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:96210800-96212600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:96210800-96212600	Weak transcription	Aorta	Aorta
35	chr9:96210800-96212600	Weak transcription	Gastric	stomach
36	chr9:96210800-96212600	Weak transcription	Ovary	ovary
37	chr9:96210800-96212600	Weak transcription	Psoas Muscle	Psoas
38	chr9:96210800-96212600	Weak transcription	Thymus	Thymus
39	chr9:96211000-96212400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:96211000-96212400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:96211000-96212400	Weak transcription	Brain Substantia Nigra	brain
42	chr9:96211000-96212400	Weak transcription	Fetal Kidney	kidney
43	chr9:96211000-96212600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr9:96211200-96212400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
45	chr9:96211400-96212400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr9:96211400-96212600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
47	chr9:96211400-96212600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr9:96211400-96212600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr9:96211400-96212800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:96211600-96212400	Weak transcription	HUVEC	blood vessel

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