Variant report

Variant	rs10733748
Chromosome Location	chr9:96269184-96269185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96212662..96217709-chr9:96266725..96273295,11	MCF-7	breast:
2	chr9:96268450..96271013-chr9:96286354..96288528,2	K562	blood:
3	chr9:96264790..96266601-chr9:96268569..96271456,2	K562	blood:
4	chr19:36413651..36415151-chr9:96267959..96269970,2	MCF-7	breast:
5	chr9:96267811..96269599-chr9:96270496..96273259,2	MCF-7	breast:
6	chr9:96261356..96262938-chr9:96267899..96270000,2	MCF-7	breast:
7	chr9:96266575..96269260-chr9:96336761..96339390,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10119086	0.82[AMR][1000 genomes]
rs10821156	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2126904	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2244422	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2254351	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2258456	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4330749	0.85[AMR][1000 genomes]
rs4743925	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4743926	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4744244	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6479489	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6479490	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6479491	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs928367	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:96256800-96269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:96260400-96275600	Weak transcription	Esophagus	oesophagus
6	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:96263200-96270600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:96263400-96269800	Weak transcription	Spleen	Spleen
13	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
14	chr9:96263600-96275400	Weak transcription	Brain Germinal Matrix	brain
15	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:96264000-96269600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:96264000-96270400	Weak transcription	Pancreas	Pancrea
18	chr9:96264000-96270400	Weak transcription	Thymus	Thymus
19	chr9:96264000-96273000	Weak transcription	Ovary	ovary
20	chr9:96264000-96273200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:96264000-96273400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:96264000-96273400	Weak transcription	Fetal Heart	heart
23	chr9:96264000-96273600	Weak transcription	Brain Angular Gyrus	brain
24	chr9:96264000-96275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:96264000-96280400	Weak transcription	Colonic Mucosa	Colon
26	chr9:96264000-96281600	Weak transcription	Aorta	Aorta
27	chr9:96264000-96286600	Weak transcription	NH-A	brain
28	chr9:96264200-96269800	Weak transcription	Right Ventricle	heart
29	chr9:96264200-96270000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr9:96264200-96270200	Weak transcription	Fetal Stomach	stomach
31	chr9:96264200-96275400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:96264200-96281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
34	chr9:96264600-96271600	Strong transcription	Primary T cells from cord blood	blood
35	chr9:96265000-96269400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:96265400-96275400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr9:96265800-96269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:96265800-96270400	Weak transcription	HMEC	breast
39	chr9:96265800-96273600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:96265800-96275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr9:96265800-96278400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
43	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr9:96266000-96269200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:96266000-96269800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr9:96266000-96272200	Weak transcription	A549	lung
47	chr9:96266000-96273400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr9:96266000-96273600	Weak transcription	Brain Anterior Caudate	brain
49	chr9:96266000-96274000	Weak transcription	NHLF	lung
50	chr9:96266000-96275600	Weak transcription	Fetal Brain Female	brain

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