Variant report

Variant	rs2126904
Chromosome Location	chr9:96198713-96198714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96197328..96199398-chr9:96213169..96215579,3	K562	blood:
2	chr9:96196696..96199442-chr9:96211213..96213936,2	K562	blood:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10733748	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10821156	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2244422	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2249747	0.84[AFR][1000 genomes]
rs2254351	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2258456	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743925	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743926	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744244	0.94[EUR][1000 genomes]
rs6479489	0.94[EUR][1000 genomes]
rs6479490	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6479491	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs928367	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2126904	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung
4	chr9:96194000-96207800	Weak transcription	Thymus	Thymus
5	chr9:96194200-96207600	Weak transcription	Primary T cells from cord blood	blood
6	chr9:96194400-96208000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr9:96194400-96208000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:96194400-96208400	Weak transcription	Fetal Intestine Small	intestine
9	chr9:96194400-96208400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:96194400-96208400	Weak transcription	Small Intestine	intestine
11	chr9:96194400-96208800	Weak transcription	Brain Anterior Caudate	brain
12	chr9:96194400-96209200	Weak transcription	Fetal Kidney	kidney
13	chr9:96194600-96208200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:96195400-96208200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:96195400-96208200	Weak transcription	Left Ventricle	heart
16	chr9:96195600-96207800	Weak transcription	GM12878-XiMat	blood
17	chr9:96195600-96208400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:96196800-96198800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:96196800-96208400	Weak transcription	Fetal Lung	lung
20	chr9:96196800-96209600	Weak transcription	Psoas Muscle	Psoas
21	chr9:96197000-96208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:96197000-96212400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:96197200-96207800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:96197400-96208200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:96197400-96208800	Weak transcription	Colonic Mucosa	Colon
26	chr9:96197600-96207600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:96197800-96207800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:96197800-96209000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:96197800-96209200	Weak transcription	Brain Angular Gyrus	brain
30	chr9:96198000-96199000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr9:96198000-96199400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:96198000-96208000	Weak transcription	Primary B cells from cord blood	blood
33	chr9:96198000-96208200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr9:96198000-96212600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:96198200-96207600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr9:96198200-96208200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:96198400-96199400	Weak transcription	Placenta	Placenta
38	chr9:96198400-96208200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr9:96198600-96198800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:96198600-96198800	Enhancers	HMEC	breast
41	chr9:96198600-96198800	Enhancers	NHEK	skin
42	chr9:96198600-96208000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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