Variant report

Variant	rs10993302
Chromosome Location	chr9:97449197-97449198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10821385	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10993293	0.85[EUR][1000 genomes]
rs12554486	0.91[EUR][1000 genomes]
rs12684995	0.90[EUR][1000 genomes]
rs4743965	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4744368	0.91[EUR][1000 genomes]
rs7847004	0.91[EUR][1000 genomes]
rs7847107	0.91[EUR][1000 genomes]
rs7870801	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
2	chr9:97438800-97449800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:97447800-97449200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:97448200-97450000	Enhancers	Small Intestine	intestine
5	chr9:97448400-97449200	Enhancers	Liver	Liver
6	chr9:97448400-97449200	Enhancers	NHDF-Ad	bronchial
7	chr9:97448400-97451600	Enhancers	HepG2	liver
8	chr9:97448600-97449200	Enhancers	Fetal Intestine Large	intestine
9	chr9:97448600-97449800	Enhancers	A549	lung
10	chr9:97449000-97450200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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