Variant report

Variant	rs4743965
Chromosome Location	chr9:97427531-97427532
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10821385	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993293	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10993302	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12554486	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12684995	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744368	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7847004	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7847107	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7870801	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97420000-97427800	Weak transcription	HSMMtube	muscle
2	chr9:97424600-97431400	Enhancers	Fetal Intestine Large	intestine
3	chr9:97424600-97431400	Enhancers	Fetal Intestine Small	intestine
4	chr9:97425600-97428000	Enhancers	Liver	Liver
5	chr9:97426600-97427600	Weak transcription	HepG2	liver
6	chr9:97426800-97428000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:97426800-97428200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:97427200-97428000	Enhancers	HSMM	muscle
9	chr9:97427400-97428800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:97427400-97431200	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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