Variant report

Variant	rs10993328
Chromosome Location	chr9:97489045-97489046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:69366657..69367353-chr9:97488412..97489305,2	HCT-116	colon:
2	chr9:97399286..97401961-chr9:97487355..97490023,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165140	Chromatin interaction
ENSG00000212766	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10993339	0.94[ASN][1000 genomes]
rs10993357	0.82[ASN][1000 genomes]
rs10993358	0.82[ASN][1000 genomes]
rs10993359	0.82[ASN][1000 genomes]
rs10993367	0.84[ASN][1000 genomes]
rs11534283	0.82[ASN][1000 genomes]
rs12236906	0.94[ASN][1000 genomes]
rs12238135	0.82[ASN][1000 genomes]
rs59409790	0.94[ASN][1000 genomes]
rs7036387	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97487600-97490000	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr9:97488200-97489400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr9:97488400-97489200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:97488400-97489200	Active TSS	Primary T cells from cord blood	blood
5	chr9:97488400-97489200	Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr9:97488400-97489200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:97488400-97489400	Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr9:97488400-97489400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr9:97488400-97489400	Active TSS	Liver	Liver
10	chr9:97488400-97489400	Active TSS	Duodenum Mucosa	Duodenum
11	chr9:97488400-97489400	Active TSS	Fetal Brain Male	brain
12	chr9:97488400-97489400	Active TSS	Fetal Brain Female	brain
13	chr9:97488400-97489400	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr9:97488400-97489400	Active TSS	Rectal Smooth Muscle	rectum
15	chr9:97488400-97489400	Active TSS	Thymus	Thymus
16	chr9:97488400-97489400	Active TSS	NH-A	brain
17	chr9:97488400-97489600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:97488400-97489600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:97488400-97489600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr9:97488400-97489600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:97488400-97489600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:97488400-97489600	Active TSS	Muscle Satellite Cultured Cells	--
23	chr9:97488400-97489600	Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr9:97488400-97489600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:97488400-97489600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:97488400-97489600	Active TSS	Brain Anterior Caudate	brain
27	chr9:97488400-97489600	Active TSS	Brain Substantia Nigra	brain
28	chr9:97488400-97489600	Active TSS	Colon Smooth Muscle	Colon
29	chr9:97488400-97489600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr9:97488400-97489600	Active TSS	Fetal Lung	lung
31	chr9:97488400-97489600	Active TSS	Left Ventricle	heart
32	chr9:97488400-97489600	Active TSS	Ovary	ovary
33	chr9:97488400-97489600	Active TSS	Stomach Smooth Muscle	stomach
34	chr9:97488400-97489600	Active TSS	A549	lung
35	chr9:97488400-97489800	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr9:97488400-97489800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr9:97488400-97489800	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr9:97488400-97489800	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr9:97488400-97489800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr9:97488400-97489800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:97488400-97489800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr9:97488400-97489800	Active TSS	Aorta	Aorta
43	chr9:97488400-97489800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:97488400-97489800	Active TSS	Colonic Mucosa	Colon
45	chr9:97488400-97489800	Active TSS	Psoas Muscle	Psoas
46	chr9:97488400-97489800	Active TSS	Right Atrium	heart
47	chr9:97488400-97489800	Active TSS	Right Ventricle	heart
48	chr9:97488400-97489800	Active TSS	HSMM	muscle
49	chr9:97488400-97489800	Active TSS	HSMMtube	muscle
50	chr9:97488400-97490000	Active TSS	H1 Cell Line	embryonic stem cell

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