Variant report

Variant	rs11534283
Chromosome Location	chr9:97600542-97600543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97557777..97559684-chr9:97600038..97601628,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10993328	0.82[ASN][1000 genomes]
rs10993339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993367	0.91[ASN][1000 genomes]
rs10993371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993379	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12236906	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12238135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59409790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7036387	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97570000-97601400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
3	chr9:97572000-97601600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr9:97581800-97609600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:97585000-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:97589200-97602000	Weak transcription	Lung	lung
7	chr9:97589200-97605400	Weak transcription	Spleen	Spleen
8	chr9:97589200-97609400	Weak transcription	Pancreas	Pancrea
9	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
10	chr9:97590400-97602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:97590600-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:97590600-97616000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:97591000-97609200	Weak transcription	Osteobl	bone
14	chr9:97592200-97608400	Weak transcription	HSMMtube	muscle
15	chr9:97592200-97609400	Weak transcription	NHDF-Ad	bronchial
16	chr9:97597200-97603000	Weak transcription	Liver	Liver
17	chr9:97598400-97604600	Weak transcription	HepG2	liver
18	chr9:97599000-97602000	Weak transcription	Stomach Mucosa	stomach
19	chr9:97599600-97600800	Strong transcription	HSMM	muscle
20	chr9:97600000-97609400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:97600200-97609600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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