Variant report

Variant	rs10993977
Chromosome Location	chr10:61485114-61485115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11497740	0.86[AFR][1000 genomes]
rs12250264	0.94[AFR][1000 genomes]
rs12265398	0.87[AFR][1000 genomes]
rs59884290	0.95[AFR][1000 genomes]
rs73267546	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975775	chr10:61477927-61486070	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61482600-61485600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:61483400-61486600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:61484400-61485200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:61484400-61487000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:61484400-61487600	Weak transcription	Psoas Muscle	Psoas
6	chr10:61484600-61485400	Weak transcription	Colonic Mucosa	Colon
7	chr10:61484800-61485200	Weak transcription	Stomach Mucosa	stomach
8	chr10:61485000-61485600	Enhancers	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links