Variant report

Variant	rs59884290
Chromosome Location	chr10:61507103-61507104
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10993977	0.95[AFR][1000 genomes]
rs11497740	0.86[AFR][1000 genomes]
rs12250264	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265398	0.87[AFR][1000 genomes]
rs73267546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61495200-61507400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:61496000-61507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:61501800-61507400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:61505400-61511000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:61506400-61507800	Enhancers	Psoas Muscle	Psoas
6	chr10:61506800-61507400	Enhancers	Stomach Mucosa	stomach
7	chr10:61507000-61508600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:61507000-61509000	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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