Variant report

Variant	rs10994023
Chromosome Location	chr10:61562977-61562978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61385930..61387732-chr10:61562778..61564958,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10509113	0.82[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10761416	0.82[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821598	0.80[AMR][1000 genomes]
rs10821602	0.82[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10994010	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10994012	0.80[AMR][1000 genomes]
rs10994013	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10994015	0.96[ASN][1000 genomes]
rs10994017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10994018	1.00[ASN][1000 genomes]
rs10994019	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10994020	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10994025	0.90[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs12217325	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12219485	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12219794	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12262905	0.82[CEU][hapmap]
rs12264827	0.82[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12414822	0.82[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16912937	0.82[CEU][hapmap]
rs16914105	0.87[GIH][hapmap]
rs3793881	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3802695	1.00[JPT][hapmap]
rs7096663	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7098890	1.00[MEX][hapmap]
rs7917618	1.00[ASW][hapmap];0.82[MKK][hapmap]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
4	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:61548600-61573000	Strong transcription	Dnd41	blood
6	chr10:61549600-61572000	Strong transcription	Liver	Liver
7	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
8	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
9	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
10	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
11	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:61551800-61563200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:61553000-61563000	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:61553000-61563400	Weak transcription	Colonic Mucosa	Colon
17	chr10:61553000-61564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:61553200-61563400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:61553200-61563600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:61553200-61564200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:61553400-61563200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:61553400-61563200	Weak transcription	Brain Germinal Matrix	brain
24	chr10:61553400-61563200	Weak transcription	Right Ventricle	heart
25	chr10:61554200-61563200	Weak transcription	Hela-S3	cervix
26	chr10:61554200-61563400	Weak transcription	HUVEC	blood vessel
27	chr10:61554400-61563000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:61554400-61563200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:61554400-61563200	Weak transcription	NHLF	lung
30	chr10:61554400-61563400	Weak transcription	Brain Substantia Nigra	brain
31	chr10:61554600-61564200	Weak transcription	Fetal Brain Female	brain
32	chr10:61554800-61563200	Weak transcription	Brain Angular Gyrus	brain
33	chr10:61554800-61569000	Weak transcription	Stomach Mucosa	stomach
34	chr10:61554800-61571000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:61556000-61568400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr10:61556200-61563200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:61556200-61568800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:61556200-61569000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:61556200-61573800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:61556200-61573800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:61556200-61574800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr10:61556200-61574800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr10:61556600-61563000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:61556600-61563200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:61556600-61573000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:61556800-61570400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:61556800-61574600	Strong transcription	Primary T cells from cord blood	blood
49	chr10:61557400-61573400	Strong transcription	Adipose Nuclei	Adipose
50	chr10:61557400-61574600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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