Variant report

Variant	rs10994063
Chromosome Location	chr10:61649971-61649972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61642094..61644181-chr10:61649311..61651720,2	K562	blood:
2	chr10:61649784..61652594-chr10:61664669..61667678,3	MCF-7	breast:
3	chr10:61641674..61643594-chr10:61648088..61650811,2	K562	blood:
4	chr10:61639063..61643015-chr10:61647185..61650219,3	MCF-7	breast:
5	chr10:61648268..61650504-chr10:61650711..61652681,2	MCF-7	breast:
6	chr10:61647386..61652939-chr10:61663740..61669349,9	K562	blood:
7	chr10:61645960..61647887-chr10:61649262..61651552,2	MCF-7	breast:
8	chr10:61632628..61635950-chr10:61647299..61651205,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12246214	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249504	1.00[AMR][1000 genomes]
rs3793875	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:61634400-61651200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:61637600-61653600	Weak transcription	NHDF-Ad	bronchial
4	chr10:61637800-61653600	Weak transcription	NH-A	brain
5	chr10:61638400-61653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:61638400-61653600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:61638400-61653600	Weak transcription	Osteobl	bone
8	chr10:61638600-61653200	Weak transcription	HSMMtube	muscle
9	chr10:61641200-61653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:61641400-61652000	Weak transcription	Fetal Heart	heart
11	chr10:61641600-61650800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:61641600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:61641600-61664200	Weak transcription	A549	lung
14	chr10:61641800-61655400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:61643000-61659400	Weak transcription	Hela-S3	cervix
16	chr10:61644600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:61645600-61651200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:61645800-61651200	Weak transcription	Small Intestine	intestine
19	chr10:61645800-61659400	Weak transcription	Fetal Brain Male	brain
20	chr10:61646200-61651400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:61647000-61651200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:61647000-61655000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:61647200-61651400	Weak transcription	Adipose Nuclei	Adipose
24	chr10:61647200-61653600	Weak transcription	Right Ventricle	heart
25	chr10:61647200-61655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:61647400-61652000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:61647800-61650200	Genic enhancers	Aorta	Aorta
28	chr10:61647800-61650200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr10:61647800-61650200	Genic enhancers	Lung	lung
30	chr10:61647800-61650200	Genic enhancers	Pancreas	Pancrea
31	chr10:61647800-61650400	Strong transcription	Fetal Stomach	stomach
32	chr10:61647800-61651000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:61647800-61651000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:61647800-61651000	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:61647800-61651600	Strong transcription	Fetal Muscle Leg	muscle
36	chr10:61647800-61651800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:61648000-61650200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:61648000-61650200	Strong transcription	Fetal Intestine Small	intestine
39	chr10:61648000-61653600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:61648200-61650200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:61648200-61652000	Strong transcription	Primary T cells from cord blood	blood
42	chr10:61648200-61655200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:61648400-61650200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:61648400-61651200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr10:61648400-61654000	Weak transcription	Psoas Muscle	Psoas
46	chr10:61648600-61650000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:61648600-61650000	Strong transcription	Fetal Lung	lung
48	chr10:61648600-61650200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:61648600-61650400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:61648600-61651200	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links