Variant report

Variant	rs12249504
Chromosome Location	chr10:61665210-61665211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61643762..61645786-chr10:61664123..61666003,2	MCF-7	breast:
2	chr10:61593371..61594213-chr10:61664532..61665492,2	MCF-7	breast:
3	chr10:61664492..61665429-chr5:179247686..179248523,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000161011	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10994063	1.00[AMR][1000 genomes]
rs12246214	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73263469	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61663400-61665800	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr10:61663400-61665800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr10:61663400-61668400	Active TSS	Aorta	Aorta
4	chr10:61663600-61665400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:61663800-61665400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:61663800-61665600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:61663800-61665800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr10:61663800-61666800	Active TSS	Colon Smooth Muscle	Colon
9	chr10:61663800-61667000	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr10:61664000-61665400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr10:61664000-61665400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr10:61664000-61665400	Flanking Active TSS	Fetal Brain Male	brain
13	chr10:61664000-61665400	Flanking Active TSS	Fetal Brain Female	brain
14	chr10:61664000-61665400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr10:61664000-61665400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr10:61664000-61667000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:61664000-61667000	Active TSS	Esophagus	oesophagus
18	chr10:61664000-61667200	Active TSS	Fetal Intestine Large	intestine
19	chr10:61664200-61665400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr10:61664200-61665400	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr10:61664200-61665400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr10:61664200-61665400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr10:61664200-61666000	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr10:61664200-61666000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr10:61664200-61666400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:61664200-61667000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:61664200-61668800	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr10:61664400-61665400	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr10:61664400-61665400	Flanking Active TSS	Fetal Muscle Trunk	muscle
30	chr10:61664400-61665600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:61664400-61665600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:61664400-61665800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr10:61664400-61666800	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr10:61664400-61666800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:61664400-61667000	Active TSS	H9 Cell Line	embryonic stem cell
36	chr10:61664400-61667000	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr10:61664400-61667000	Active TSS	Ovary	ovary
38	chr10:61664600-61665400	Flanking Active TSS	Lung	lung
39	chr10:61664600-61665600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr10:61664600-61665600	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr10:61664600-61665600	Flanking Active TSS	Fetal Thymus	thymus
42	chr10:61664600-61665800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr10:61664600-61667000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:61664600-61667200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:61664600-61668800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr10:61664800-61665400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr10:61664800-61665400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:61664800-61665400	Flanking Active TSS	K562	blood
49	chr10:61664800-61665600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr10:61664800-61666800	Active TSS	H1 Cell Line	embryonic stem cell

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