Variant report

Variant	rs11000255
Chromosome Location	chr10:53710176-53710177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10823903	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11000191	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11000285	0.81[ASN][1000 genomes]
rs12354723	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356995	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4604821	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61847480	0.91[ASN][1000 genomes]
rs7096762	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53706000-53710200	Weak transcription	Right Atrium	heart
2	chr10:53707600-53713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:53709600-53710800	Enhancers	Colon Smooth Muscle	Colon
4	chr10:53710000-53710200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:53710000-53710200	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links