Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11000191	0.85[AMR][1000 genomes]
rs11000255	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11000285	0.86[ASN][1000 genomes]
rs11000333	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11000345	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11000352	0.87[EUR][1000 genomes]
rs11000402	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11000409	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11510890	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11516536	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12243731	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12257861	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12354723	0.85[AMR][1000 genomes]
rs2454540	0.92[ASN][1000 genomes]
rs2454547	0.92[ASN][1000 genomes]
rs4420207	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4603250	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4604821	0.81[AMR][1000 genomes]
rs61847549	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7078910	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv519743	chr10:53721665-53773912	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
2	chr10:53720800-53729000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:53720800-53732600	Weak transcription	Psoas Muscle	Psoas
4	chr10:53720800-53732800	Weak transcription	Fetal Muscle Leg	muscle

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