Variant report

Variant	rs11003489
Chromosome Location	chr10:55005998-55005999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11003484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11003486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11003487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11003488	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1871070	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4587643	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7067961	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7070682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7090001	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094123	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913887	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054987	chr10:54976344-55097467	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2760139	chr10:54976356-55097479	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv515785	chr10:54981512-55093531	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1053758	chr10:54993785-55046152	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1041044	chr10:54998015-55043199	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55005200-55006200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55005600-55007000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr10:55005800-55006000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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