Variant report

Variant	rs11003579
Chromosome Location	chr10:55089871-55089872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1002409	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10824996	0.92[AFR][1000 genomes]
rs11003540	0.90[AFR][1000 genomes]
rs11003542	0.92[AFR][1000 genomes]
rs11003546	0.92[AFR][1000 genomes]
rs11003547	0.92[AFR][1000 genomes]
rs11003553	0.92[AFR][1000 genomes]
rs11003554	0.92[AFR][1000 genomes]
rs11003556	0.83[AFR][1000 genomes]
rs11003559	0.92[AFR][1000 genomes]
rs11003560	0.83[AFR][1000 genomes]
rs11003561	0.83[AFR][1000 genomes]
rs11003562	0.83[AFR][1000 genomes]
rs11003563	0.83[AFR][1000 genomes]
rs11003564	0.92[AFR][1000 genomes]
rs11003565	0.83[AFR][1000 genomes]
rs11003566	0.80[AFR][1000 genomes]
rs11003567	0.83[AFR][1000 genomes]
rs11003569	0.83[AFR][1000 genomes]
rs11003573	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11003577	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11003581	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11003585	0.81[AFR][1000 genomes]
rs12569721	0.84[AFR][1000 genomes]
rs12761387	0.83[AFR][1000 genomes]
rs12762475	0.83[AFR][1000 genomes]
rs12774402	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12775366	0.92[AFR][1000 genomes]
rs12776870	0.92[AFR][1000 genomes]
rs12777584	0.87[AFR][1000 genomes]
rs16913753	0.83[AFR][1000 genomes]
rs16913756	0.83[AFR][1000 genomes]
rs16937381	0.83[AFR][1000 genomes]
rs16937382	0.83[AFR][1000 genomes]
rs16937385	0.83[AFR][1000 genomes]
rs16937391	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16937394	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2384201	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2384203	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2891449	0.83[AFR][1000 genomes]
rs34512860	0.92[AFR][1000 genomes]
rs34868341	0.89[AFR][1000 genomes]
rs35067899	0.87[AFR][1000 genomes]
rs35121462	0.92[AFR][1000 genomes]
rs35201109	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35279234	0.83[AFR][1000 genomes]
rs35520722	0.83[AFR][1000 genomes]
rs35571202	0.89[AFR][1000 genomes]
rs35919738	0.80[AFR][1000 genomes]
rs4007302	0.83[AFR][1000 genomes]
rs4317893	0.81[AFR][1000 genomes]
rs4362063	0.83[AFR][1000 genomes]
rs4638216	0.83[AFR][1000 genomes]
rs4935420	0.92[AFR][1000 genomes]
rs4935421	0.83[AFR][1000 genomes]
rs4935422	0.83[AFR][1000 genomes]
rs66618328	0.83[AFR][1000 genomes]
rs66697215	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054987	chr10:54976344-55097467	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2760139	chr10:54976356-55097479	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv515785	chr10:54981512-55093531	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv550929	chr10:55030113-55093531	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv982896	chr10:55082458-55090462	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55077600-55094200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:55085000-55092600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:55088600-55095400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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