Variant report

Variant	rs12569721
Chromosome Location	chr10:55101005-55101006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1002409	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10824996	0.82[AFR][1000 genomes]
rs11003538	0.80[ASN][1000 genomes]
rs11003539	0.80[ASN][1000 genomes]
rs11003540	0.80[ASN][1000 genomes]
rs11003541	0.80[ASN][1000 genomes]
rs11003542	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11003543	0.80[ASN][1000 genomes]
rs11003544	0.80[ASN][1000 genomes]
rs11003545	0.80[ASN][1000 genomes]
rs11003546	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11003547	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11003548	0.80[ASN][1000 genomes]
rs11003550	0.81[ASN][1000 genomes]
rs11003552	0.81[ASN][1000 genomes]
rs11003553	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11003554	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11003556	0.81[ASN][1000 genomes]
rs11003557	0.81[ASN][1000 genomes]
rs11003558	0.81[ASN][1000 genomes]
rs11003559	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11003560	0.81[ASN][1000 genomes]
rs11003561	0.81[ASN][1000 genomes]
rs11003562	0.81[ASN][1000 genomes]
rs11003564	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11003565	0.81[ASN][1000 genomes]
rs11003566	0.81[ASN][1000 genomes]
rs11003567	0.81[ASN][1000 genomes]
rs11003569	0.81[ASN][1000 genomes]
rs11003573	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11003577	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11003579	0.84[AFR][1000 genomes]
rs11003581	0.93[ASN][1000 genomes]
rs11003585	0.91[AFR][1000 genomes]
rs12219998	0.81[ASN][1000 genomes]
rs12569750	0.88[AFR][1000 genomes]
rs12570827	0.80[ASN][1000 genomes]
rs12761387	0.81[ASN][1000 genomes]
rs12762475	0.80[ASN][1000 genomes]
rs12774402	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12775366	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12776870	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12777404	0.80[ASN][1000 genomes]
rs12777584	0.80[ASN][1000 genomes]
rs12777606	0.80[ASN][1000 genomes]
rs12777791	0.80[ASN][1000 genomes]
rs12781547	0.81[ASN][1000 genomes]
rs16913753	0.81[ASN][1000 genomes]
rs16913756	0.81[ASN][1000 genomes]
rs16937381	0.82[ASN][1000 genomes]
rs16937382	0.82[ASN][1000 genomes]
rs16937385	0.82[ASN][1000 genomes]
rs16937391	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16937394	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2384201	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2384203	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2891449	0.81[ASN][1000 genomes]
rs34512860	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35067899	0.81[ASN][1000 genomes]
rs35121462	0.82[AFR][1000 genomes]
rs35201109	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35279234	0.80[ASN][1000 genomes]
rs35364536	0.81[ASN][1000 genomes]
rs35520722	0.81[ASN][1000 genomes]
rs4007302	0.81[ASN][1000 genomes]
rs4317893	0.81[ASN][1000 genomes]
rs4362063	0.81[ASN][1000 genomes]
rs4638216	0.81[ASN][1000 genomes]
rs4935420	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4935421	0.81[ASN][1000 genomes]
rs4935422	0.81[ASN][1000 genomes]
rs61859783	0.92[ASN][1000 genomes]
rs66618328	0.81[ASN][1000 genomes]
rs66697215	0.82[ASN][1000 genomes]
rs67439024	0.80[ASN][1000 genomes]
rs67510624	0.81[ASN][1000 genomes]
rs68140745	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55096600-55104000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55098400-55103600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:55098600-55103600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:55098800-55103600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:55098800-55103600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:55099400-55103800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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