Variant report

Variant	rs61859783
Chromosome Location	chr10:55097745-55097746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1002409	0.85[ASN][1000 genomes]
rs10824996	0.83[ASN][1000 genomes]
rs11003538	0.83[ASN][1000 genomes]
rs11003539	0.83[ASN][1000 genomes]
rs11003540	0.83[ASN][1000 genomes]
rs11003541	0.83[ASN][1000 genomes]
rs11003542	0.83[ASN][1000 genomes]
rs11003543	0.83[ASN][1000 genomes]
rs11003544	0.83[ASN][1000 genomes]
rs11003545	0.83[ASN][1000 genomes]
rs11003546	0.83[ASN][1000 genomes]
rs11003547	0.83[ASN][1000 genomes]
rs11003548	0.83[ASN][1000 genomes]
rs11003550	0.84[ASN][1000 genomes]
rs11003552	0.84[ASN][1000 genomes]
rs11003553	0.84[ASN][1000 genomes]
rs11003554	0.84[ASN][1000 genomes]
rs11003556	0.84[ASN][1000 genomes]
rs11003557	0.84[ASN][1000 genomes]
rs11003558	0.84[ASN][1000 genomes]
rs11003559	0.84[ASN][1000 genomes]
rs11003560	0.84[ASN][1000 genomes]
rs11003561	0.84[ASN][1000 genomes]
rs11003562	0.84[ASN][1000 genomes]
rs11003563	0.83[ASN][1000 genomes]
rs11003564	0.84[ASN][1000 genomes]
rs11003565	0.84[ASN][1000 genomes]
rs11003566	0.84[ASN][1000 genomes]
rs11003567	0.84[ASN][1000 genomes]
rs11003569	0.84[ASN][1000 genomes]
rs11003573	0.85[ASN][1000 genomes]
rs11003577	0.85[ASN][1000 genomes]
rs11003581	0.96[ASN][1000 genomes]
rs12219998	0.84[ASN][1000 genomes]
rs12569721	0.92[ASN][1000 genomes]
rs12570827	0.83[ASN][1000 genomes]
rs12761387	0.84[ASN][1000 genomes]
rs12762475	0.83[ASN][1000 genomes]
rs12774402	0.84[ASN][1000 genomes]
rs12775366	0.83[ASN][1000 genomes]
rs12776870	0.83[ASN][1000 genomes]
rs12777404	0.83[ASN][1000 genomes]
rs12777584	0.83[ASN][1000 genomes]
rs12777606	0.83[ASN][1000 genomes]
rs12777791	0.83[ASN][1000 genomes]
rs12781547	0.84[ASN][1000 genomes]
rs16913753	0.84[ASN][1000 genomes]
rs16913756	0.84[ASN][1000 genomes]
rs16937381	0.85[ASN][1000 genomes]
rs16937382	0.85[ASN][1000 genomes]
rs16937385	0.85[ASN][1000 genomes]
rs16937391	0.85[ASN][1000 genomes]
rs16937394	0.96[ASN][1000 genomes]
rs2384188	0.83[ASN][1000 genomes]
rs2384201	0.85[ASN][1000 genomes]
rs2384203	0.94[ASN][1000 genomes]
rs2891446	0.83[ASN][1000 genomes]
rs2891449	0.84[ASN][1000 genomes]
rs34512860	0.83[ASN][1000 genomes]
rs34868341	0.83[ASN][1000 genomes]
rs35067899	0.84[ASN][1000 genomes]
rs35121462	0.83[ASN][1000 genomes]
rs35201109	0.96[ASN][1000 genomes]
rs35279234	0.83[ASN][1000 genomes]
rs35364536	0.84[ASN][1000 genomes]
rs35520722	0.84[ASN][1000 genomes]
rs35571202	0.83[ASN][1000 genomes]
rs35919738	0.82[ASN][1000 genomes]
rs4007302	0.84[ASN][1000 genomes]
rs4317893	0.84[ASN][1000 genomes]
rs4362063	0.84[ASN][1000 genomes]
rs4638216	0.84[ASN][1000 genomes]
rs4935420	0.84[ASN][1000 genomes]
rs4935421	0.84[ASN][1000 genomes]
rs4935422	0.84[ASN][1000 genomes]
rs66618328	0.84[ASN][1000 genomes]
rs66697215	0.85[ASN][1000 genomes]
rs67439024	0.83[ASN][1000 genomes]
rs67510624	0.84[ASN][1000 genomes]
rs68140745	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55094600-55097800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:55096600-55098400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:55096600-55104000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:55096800-55098400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:55097000-55098600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:55097200-55099400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:55097400-55097800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:55097400-55098600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:55097400-55098800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:55097600-55098600	Enhancers	HUES6 Cell Line	embryonic stem cell

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