Variant report
| Variant | rs11003888 |
|---|---|
| Chromosome Location | chr10:55619023-55619024 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10509000 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10763010 | 0.82[JPT][hapmap] |
| rs10825114 | 0.82[JPT][hapmap] |
| rs10825122 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10825123 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10825130 | 0.82[JPT][hapmap] |
| rs11003872 | 0.82[JPT][hapmap] |
| rs11003873 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11003876 | 0.82[JPT][hapmap] |
| rs11003878 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs11003886 | 0.82[JPT][hapmap] |
| rs12263108 | 0.82[JPT][hapmap] |
| rs16937765 | 1.00[EUR][1000 genomes] |
| rs16937793 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs16937794 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs16937797 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16937801 | 1.00[JPT][hapmap] |
| rs1900418 | 0.82[JPT][hapmap] |
| rs1900443 | 0.82[JPT][hapmap] |
| rs1900455 | 0.82[JPT][hapmap] |
| rs4310525 | 0.82[JPT][hapmap] |
| rs4519000 | 0.82[JPT][hapmap] |
| rs4935474 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7089209 | 0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1847684 | chr10:55371601-55638740 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv1842975 | chr10:55378668-55736655 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv895429 | chr10:55564355-55736655 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
