Variant report

Variant	rs16937793
Chromosome Location	chr10:55599285-55599286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	10:55597627-55602376..10:55810019-55812112	H1-hESC	embryonic stem cell:	embryo
2	10:55597627-55602376..10:55882057-55892580	GM12878	blood:
3	10:55597627-55602376..10:55892580-55896204	H1-hESC	embryonic stem cell:	embryo
4	10:55597627-55602376..10:55871238-55872736	GM12878	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10509000	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740556	0.85[JPT][hapmap]
rs10763010	0.85[JPT][hapmap]
rs10763011	0.85[JPT][hapmap]
rs10825114	0.85[JPT][hapmap]
rs10825115	0.85[JPT][hapmap]
rs10825119	0.85[JPT][hapmap]
rs10825122	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825123	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10825130	0.85[JPT][hapmap]
rs10825132	0.85[JPT][hapmap]
rs10825168	0.82[GIH][hapmap]
rs11003871	0.85[JPT][hapmap]
rs11003872	0.85[JPT][hapmap]
rs11003873	0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11003874	0.85[JPT][hapmap]
rs11003876	0.85[JPT][hapmap]
rs11003878	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11003879	0.85[JPT][hapmap]
rs11003886	0.85[JPT][hapmap]
rs11003888	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003908	0.88[GIH][hapmap]
rs11003916	0.88[GIH][hapmap];0.86[MEX][hapmap]
rs11003927	0.81[GIH][hapmap]
rs12263108	0.85[JPT][hapmap]
rs12268247	0.85[JPT][hapmap]
rs16937765	0.89[EUR][1000 genomes]
rs16937794	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16937797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16937801	1.00[JPT][hapmap]
rs16937813	0.88[GIH][hapmap];0.86[MEX][hapmap]
rs1900415	0.85[JPT][hapmap]
rs1900417	0.84[JPT][hapmap]
rs1900418	0.85[JPT][hapmap]
rs1900419	0.85[JPT][hapmap]
rs1900443	0.85[JPT][hapmap]
rs1900455	0.85[JPT][hapmap]
rs4310525	0.84[JPT][hapmap]
rs4417175	0.85[JPT][hapmap]
rs4417176	0.85[JPT][hapmap]
rs4519000	0.85[JPT][hapmap]
rs4540756	0.85[JPT][hapmap]
rs4935472	0.85[JPT][hapmap]
rs4935473	0.85[JPT][hapmap]
rs4935474	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs6481042	0.85[JPT][hapmap]
rs7074365	0.85[JPT][hapmap]
rs7089209	0.85[JPT][hapmap]
rs7358121	0.85[JPT][hapmap]
rs766868	0.85[JPT][hapmap]
rs7914433	0.85[JPT][hapmap]
rs7916446	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55596800-55599800	Weak transcription	Fetal Lung	lung

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