Variant report

Variant	rs11003927
Chromosome Location	chr10:55667500-55667501
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10763016	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10825147	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10825148	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10825149	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10825154	0.88[JPT][hapmap]
rs10825168	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11003908	0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap]
rs11003916	0.94[GIH][hapmap]
rs11003924	0.94[JPT][hapmap]
rs11003925	0.94[JPT][hapmap]
rs11003964	1.00[CEU][hapmap]
rs11003996	1.00[CEU][hapmap]
rs11003999	1.00[CEU][hapmap]
rs11004000	1.00[CEU][hapmap]
rs12572470	0.89[GIH][hapmap]
rs16937793	0.81[GIH][hapmap]
rs16937813	0.94[GIH][hapmap]
rs16937840	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1900414	0.94[JPT][hapmap]
rs1900425	0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs1900426	0.83[CHB][hapmap]
rs1900427	0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs1911427	0.86[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs2069217	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs2135724	0.83[CHB][hapmap]
rs2253198	1.00[CEU][hapmap]
rs2253647	1.00[CEU][hapmap]
rs2384337	0.84[JPT][hapmap]
rs2593126	0.89[JPT][hapmap]
rs2610846	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2660148	1.00[CEU][hapmap]
rs2660149	1.00[CEU][hapmap]
rs2660180	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs2921922	0.93[JPT][hapmap]
rs2921923	0.88[JPT][hapmap]
rs2926411	0.94[JPT][hapmap]
rs4478892	0.90[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs4488106	0.84[CHB][hapmap]
rs58822754	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7067725	0.89[JPT][hapmap]
rs7083009	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs74134928	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7897155	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7898068	0.94[JPT][hapmap]
rs7905665	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7905801	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9651342	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv550948	chr10:55662089-55714355	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv467213	chr10:55662089-55725234	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550949	chr10:55662089-55725234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv550950	chr10:55662156-55714355	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55665000-55673800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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