Variant report

Variant	rs11003908
Chromosome Location	chr10:55645842-55645843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10763016	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10825123	0.83[GIH][hapmap]
rs10825147	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10825148	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10825149	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10825154	0.94[JPT][hapmap]
rs10825168	0.90[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap]
rs11003873	0.83[GIH][hapmap]
rs11003894	1.00[CEU][hapmap]
rs11003901	0.86[MKK][hapmap]
rs11003902	0.84[CHB][hapmap]
rs11003909	0.86[AFR][1000 genomes]
rs11003916	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs11003921	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11003924	0.88[JPT][hapmap]
rs11003925	0.88[JPT][hapmap]
rs11003927	0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap]
rs12218632	0.86[YRI][hapmap]
rs12572470	0.84[GIH][hapmap]
rs16937793	0.88[GIH][hapmap]
rs16937801	1.00[CEU][hapmap]
rs16937805	0.85[MKK][hapmap]
rs16937813	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs16937840	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1900414	0.88[JPT][hapmap]
rs1900425	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1900426	0.88[CHB][hapmap]
rs1900427	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1911427	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2069215	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2069216	0.99[ASN][1000 genomes]
rs2069217	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593126	0.83[JPT][hapmap]
rs2610822	0.81[ASW][hapmap];0.83[MKK][hapmap]
rs2610846	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs2921922	0.86[JPT][hapmap]
rs2921923	0.82[JPT][hapmap]
rs2926390	0.82[MKK][hapmap]
rs2926411	0.88[JPT][hapmap]
rs41487044	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4287256	0.83[CHB][hapmap]
rs4364970	0.83[CHB][hapmap]
rs4466737	0.83[CHB][hapmap]
rs4478892	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs4488106	0.84[JPT][hapmap]
rs4586053	0.84[CHB][hapmap]
rs7067725	0.83[JPT][hapmap]
rs7083009	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs73246867	0.89[EUR][1000 genomes]
rs7898068	0.88[JPT][hapmap]
rs7905665	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7905801	0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55645800-55646600	Enhancers	Liver	Liver

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