Variant report

Variant	rs11003921
Chromosome Location	chr10:55656498-55656499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10740560	0.82[CHB][hapmap]
rs11003894	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs11003908	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11003916	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11003964	0.80[CHB][hapmap]
rs12572470	0.84[CHB][hapmap]
rs16937801	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs16937813	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1900421	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1900444	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1900458	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1900459	0.86[CHB][hapmap]
rs1911429	0.85[JPT][hapmap]
rs1911430	0.85[JPT][hapmap]
rs2069215	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs2069217	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2121525	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2253198	0.80[CHB][hapmap]
rs2253647	0.80[CHB][hapmap]
rs2384343	0.86[CHB][hapmap]
rs2446608	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2446609	0.86[CHB][hapmap]
rs2593107	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2593135	0.85[JPT][hapmap]
rs2593136	0.85[JPT][hapmap]
rs2610899	0.85[JPT][hapmap]
rs2610902	0.85[JPT][hapmap]
rs2660172	0.85[JPT][hapmap]
rs2660183	0.85[JPT][hapmap]
rs2660184	0.85[JPT][hapmap]
rs2660186	0.85[JPT][hapmap]
rs2660190	0.85[JPT][hapmap]
rs41487044	1.00[EUR][1000 genomes]
rs4376818	0.85[CHB][hapmap]
rs4478893	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6481045	0.86[CHB][hapmap]
rs7097365	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs73246867	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358220	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55654200-55658400	Weak transcription	Fetal Intestine Small	intestine

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