Variant report

Variant	rs12572470
Chromosome Location	chr10:55710302-55710303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10740560	0.89[CHB][hapmap]
rs10763038	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs10825168	0.89[GIH][hapmap]
rs11003908	0.84[GIH][hapmap]
rs11003916	0.84[GIH][hapmap]
rs11003921	0.84[CHB][hapmap]
rs11003927	0.89[GIH][hapmap]
rs11003964	0.82[CHB][hapmap]
rs11003968	0.89[GIH][hapmap];0.80[ASN][1000 genomes]
rs11003977	0.81[CHB][hapmap];0.89[GIH][hapmap]
rs11003999	0.85[GIH][hapmap]
rs12570313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571668	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571882	0.89[ASN][1000 genomes]
rs16937813	0.84[GIH][hapmap]
rs1900421	0.84[CHB][hapmap];0.98[ASN][1000 genomes]
rs1900422	0.95[ASN][1000 genomes]
rs1900444	0.84[CHB][hapmap]
rs1900446	0.86[ASN][1000 genomes]
rs1900458	0.83[CHB][hapmap];0.84[CHD][hapmap];0.98[ASN][1000 genomes]
rs1900459	0.84[CHB][hapmap];0.98[ASN][1000 genomes]
rs1911429	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs1911430	0.84[CHB][hapmap]
rs2121525	0.83[CHB][hapmap];0.84[CHD][hapmap];0.98[ASN][1000 genomes]
rs2166620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2166621	0.95[ASN][1000 genomes]
rs2166628	0.87[ASN][1000 genomes]
rs2253198	0.82[CHB][hapmap]
rs2253647	0.82[CHB][hapmap]
rs2384327	0.90[ASN][1000 genomes]
rs2384343	0.83[CHB][hapmap];0.84[CHD][hapmap];0.92[ASN][1000 genomes]
rs2446608	0.81[CHB][hapmap]
rs2446609	0.84[CHB][hapmap];0.97[ASN][1000 genomes]
rs2456701	0.88[CHB][hapmap];0.97[ASN][1000 genomes]
rs2593107	0.83[CHB][hapmap];0.82[CHD][hapmap];0.97[ASN][1000 genomes]
rs2593131	0.97[ASN][1000 genomes]
rs2593133	0.84[CHB][hapmap]
rs2593135	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs2593136	0.84[CHB][hapmap]
rs2610875	0.84[GIH][hapmap]
rs2610884	0.80[ASN][1000 genomes]
rs2610891	0.89[GIH][hapmap]
rs2610899	0.83[CHB][hapmap]
rs2610902	0.82[CHB][hapmap]
rs2610906	0.92[ASN][1000 genomes]
rs2610908	0.84[CHB][hapmap]
rs2660149	0.84[GIH][hapmap]
rs2660172	0.84[CHB][hapmap]
rs2660180	0.95[GIH][hapmap]
rs2660183	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs2660184	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs2660188	0.97[ASN][1000 genomes]
rs2660190	0.82[CHB][hapmap];0.97[ASN][1000 genomes]
rs2660192	0.95[ASN][1000 genomes]
rs2926408	0.91[ASN][1000 genomes]
rs6481045	0.84[CHB][hapmap];0.98[ASN][1000 genomes]
rs7358220	0.82[CHB][hapmap]
rs7911482	0.95[ASN][1000 genomes]
rs7912992	0.98[ASN][1000 genomes]
rs7915856	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv550948	chr10:55662089-55714355	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv467213	chr10:55662089-55725234	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv550949	chr10:55662089-55725234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550950	chr10:55662156-55714355	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55706600-55710400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links