Variant report

Variant	rs2660180
Chromosome Location	chr10:55748024-55748025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10825168	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs11003927	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs11003964	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11003968	0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003977	0.92[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs11003996	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11003999	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs11004000	1.00[CEU][hapmap]
rs12571668	0.89[EUR][1000 genomes]
rs12572470	0.95[GIH][hapmap]
rs16937840	1.00[CEU][hapmap]
rs1911418	1.00[MEX][hapmap]
rs2253198	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2253647	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2255310	1.00[MEX][hapmap]
rs2384366	1.00[MEX][hapmap]
rs2610846	1.00[CEU][hapmap]
rs2610875	0.84[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap]
rs2610884	0.96[ASN][1000 genomes]
rs2610885	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2610891	0.95[GIH][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2610902	0.83[CHB][hapmap]
rs2660147	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2660148	1.00[CEU][hapmap]
rs2660149	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs2660190	0.83[CHB][hapmap]
rs2926405	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2926406	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7358220	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9651342	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55745400-55750400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links