Variant report

Variant	rs2253647
Chromosome Location	chr10:55755600-55755601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55755176..55757929-chr10:55758300..55761656,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10763038	0.85[CHB][hapmap]
rs10825168	1.00[CEU][hapmap]
rs11003921	0.80[CHB][hapmap]
rs11003927	1.00[CEU][hapmap]
rs11003964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003977	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003996	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003999	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11004000	1.00[CEU][hapmap]
rs12570313	0.80[ASN][1000 genomes]
rs12571668	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12572470	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs16937840	1.00[CEU][hapmap]
rs1900421	0.80[CHB][hapmap]
rs1900444	0.80[CHB][hapmap]
rs1900459	0.80[CHB][hapmap]
rs1911429	0.85[CHB][hapmap]
rs1911430	0.86[CHB][hapmap]
rs2253198	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2446608	0.84[CHB][hapmap]
rs2446609	0.80[CHB][hapmap]
rs2456701	0.80[ASN][1000 genomes]
rs2593131	0.80[ASN][1000 genomes]
rs2593133	0.86[CHB][hapmap]
rs2593135	0.85[CHB][hapmap]
rs2593136	0.86[CHB][hapmap]
rs2610846	1.00[CEU][hapmap]
rs2610875	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs2610884	1.00[ASN][1000 genomes]
rs2610885	0.80[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2610899	0.85[CHB][hapmap]
rs2610902	0.84[CHB][hapmap]
rs2610908	0.86[CHB][hapmap]
rs2660147	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660148	1.00[CEU][hapmap]
rs2660149	1.00[CEU][hapmap]
rs2660172	0.86[CHB][hapmap]
rs2660180	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2660183	0.85[CHB][hapmap]
rs2660184	0.85[CHB][hapmap]
rs2660186	0.83[CHB][hapmap]
rs2660188	0.80[ASN][1000 genomes]
rs2660190	0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs2926405	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2926406	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6481045	0.80[CHB][hapmap]
rs7358220	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9651342	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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