Variant report

Variant	rs11003968
Chromosome Location	chr10:55749290-55749291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10763038	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs11003964	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11003977	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11003996	0.90[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs11003999	0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs12570313	0.80[ASN][1000 genomes]
rs12571668	0.82[ASN][1000 genomes]
rs12572470	0.89[GIH][hapmap];0.80[ASN][1000 genomes]
rs1900458	0.88[CHD][hapmap]
rs1911429	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs1911430	0.83[CHB][hapmap]
rs2121525	0.88[CHD][hapmap]
rs2253198	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2253647	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384343	0.88[CHD][hapmap]
rs2446608	0.81[CHB][hapmap]
rs2456701	0.80[ASN][1000 genomes]
rs2593107	0.86[CHD][hapmap]
rs2593131	0.80[ASN][1000 genomes]
rs2593133	0.83[CHB][hapmap]
rs2593135	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2593136	0.83[CHB][hapmap]
rs2610875	0.90[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap]
rs2610884	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2610885	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2610891	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2610899	0.82[CHB][hapmap]
rs2610902	0.81[CHB][hapmap]
rs2610908	0.83[CHB][hapmap]
rs2660147	0.95[ASN][1000 genomes]
rs2660149	0.95[GIH][hapmap]
rs2660172	0.83[CHB][hapmap]
rs2660180	0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2660183	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2660184	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2660188	0.80[ASN][1000 genomes]
rs2660190	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs2926405	0.98[ASN][1000 genomes]
rs2926406	0.95[ASN][1000 genomes]
rs4376818	0.81[CHB][hapmap]
rs7358220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9651342	0.90[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55745400-55750400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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