Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509003	0.96[CEU][hapmap]
rs10825135	0.81[CEU][hapmap]
rs10825137	0.81[CEU][hapmap]
rs10825165	0.96[CEU][hapmap]
rs11003923	0.88[CEU][hapmap]
rs11003961	0.96[CEU][hapmap]
rs11003964	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs11003968	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11003972	0.96[CEU][hapmap]
rs11003977	1.00[JPT][hapmap]
rs11003979	1.00[CEU][hapmap]
rs11003981	1.00[CEU][hapmap]
rs11003984	0.96[CEU][hapmap]
rs11003996	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs11003999	1.00[JPT][hapmap]
rs12763785	1.00[CEU][hapmap]
rs17709865	0.96[CEU][hapmap]
rs2135724	1.00[CEU][hapmap]
rs2253198	0.80[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2253647	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2253882	1.00[CEU][hapmap]
rs2610875	0.85[JPT][hapmap]
rs2610884	0.89[ASN][1000 genomes]
rs2610890	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2610895	1.00[CEU][hapmap]
rs2610896	0.95[CEU][hapmap]
rs2610898	0.96[CEU][hapmap]
rs2660147	0.84[ASN][1000 genomes]
rs2660175	0.96[CEU][hapmap]
rs2660180	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2660181	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2926403	1.00[CEU][hapmap]
rs2926405	0.87[ASN][1000 genomes]
rs2926406	0.84[ASN][1000 genomes]
rs2939929	1.00[CEU][hapmap]
rs7358220	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs9651342	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55745400-55750400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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